PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100204610001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HD-ZIP
Protein Properties Length: 245aa    MW: 28422.6 Da    PI: 10.1024
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100204610001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.61.2e-191266256
                                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                  ++R +f+++q++ Le+ Fe++  p  + +++LA+klgL+ rqV +WFqN+Ra+ k
  Ote100204610001|100204610001 12 SRRKRFNDDQIKSLETTFESEARPELHLKQHLANKLGLQPRQVAIWFQNKRARSK 66
                                  57999************************************************99 PP
2HD-ZIP_I/II104.86.7e-3413104293
                   HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLek 82 
                                   +++r++++q+k+LE++Fe+e + e + K++la++Lglqprqva+WFqn+RAR k+kq+E++y++Lk++yd+l+ + e+L+k
  Ote100204610001|100204610001  13 RRKRFNDDQIKSLETTFESEARPELHLKQHLANKLGLQPRQVAIWFQNKRARSKSKQIEQEYSVLKSNYDNLALQFEALKK 93 
                                   799****************************************************************************** PP

                   HD-ZIP_I/II  83 eveeLreelke 93 
                                   e+++L  ++++
  Ote100204610001|100204610001  94 ENQTLLIQVQK 104
                                   *****988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.135868IPR001356Homeobox domain
SMARTSM003894.5E-161072IPR001356Homeobox domain
SuperFamilySSF466892.31E-161180IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-171375IPR009057Homeodomain-like
PfamPF000466.1E-171366IPR001356Homeobox domain
CDDcd000863.08E-131369No hitNo description
PROSITE patternPS0002704366IPR017970Homeobox, conserved site
PfamPF021831.4E-1568108IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MPTNIKKITK NSRRKRFNDD QIKSLETTFE SEARPELHLK QHLANKLGLQ PRQVAIWFQN  60
KRARSKSKQI EQEYSVLKSN YDNLALQFEA LKKENQTLLI QVQKLRKMAD SNDGEENEKN  120
HHIKLEASQD KSFVLDINSH ELRMPLCGEP NGRIDYLDEA DVLNMAQIAE NSLASPENGC  180
SLESYNSIQF LEMDARDHKA RITRIGFVLL QKNVILFLQS FLIKHQIRSV SRKGKQHMLV  240
GRKTL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070385.12e-80homeobox-leucine zipper protein ATHB-12-like
TrEMBLA0A4D8YB514e-97A0A4D8YB51_SALSN; Homeobox-leucine zipper protein
STRINGMigut.E00626.1.p2e-77(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA102732125