PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100204950011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family NAC
Protein Properties Length: 200aa    MW: 22799.1 Da    PI: 9.2789
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100204950011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM83.54.3e-26141311128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 
                                   lppGfrF+Ptdee+v +yL++k+ + +l++ +vi+e  i++++ ++Lp      +++ y F++r+   a  ++ nr++  g
  Ote100204950011|100204950011  14 LPPGFRFQPTDEEIVFQYLARKIFSCPLPA-SVIPE--IHDFHLSNLP------DRDRYLFARRELIDA--RNVNRSICIG 83 
                                   79***************************9.88998..7889999**9......5789****9998765..5899*99*** PP

                           NAM  82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   +Wk tg++k+++++ k  +vg+++tLvfykg++p++++td +mh y +
  Ote100204950011|100204950011  84 FWKVTGSEKRIVCSkKMPVVGIRRTLVFYKGKHPHAVRTDRFMHVYCI 131
                                   **********9997355569************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-3211162IPR003441NAC domain
PROSITE profilePS5100532.14614162IPR003441NAC domain
PfamPF023657.1E-1615130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MNKFNFIRDG ETKLPPGFRF QPTDEEIVFQ YLARKIFSCP LPASVIPEIH DFHLSNLPDR  60
DRYLFARREL IDARNVNRSI CIGFWKVTGS EKRIVCSKKM PVVGIRRTLV FYKGKHPHAV  120
RTDRFMHVYC IAISENSVHH KRHSQGGLIQ IGKWVLCHVF SKKRGVEADG YDHLEMSDTD  180
SCSSDSSGSS VPSEVSSSSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-25916710173Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073111.11e-81NAC domain-containing protein 83
TrEMBLA0A4D8Y7E84e-77A0A4D8Y7E8_SALSN; Uncharacterized protein
STRINGXP_009597132.13e-60(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13872377