PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100205730021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NAC

Protein Properties

Length: 230aa MW: 25417.4 Da PI: 7.0742

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100205730021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	32.6	2.4e-10	3	37	96	128
NAM 96 kgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l Ote100205730021\|100205730021 3 NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 37 67899*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	16.626	1	56	IPR003441	NAC domain
SuperFamily	SSF101941	9.81E-13	3	56	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MVNGKQKGCK KILVLYTNFG KNRKPEKTNW VMHQYHLGQH EEEKEGELVV SKIFYQTQPR 60 QCNWSERTAA AVAGDADANL RRESGSGSCS SSKEIMPQRD DFSSAAIAGG AAPIPTYAGL 120 DIHQLKADHF GYLPFRKSFD NEAGNIGEAS LAREAAAGTC EERDMGQHHV THEQHQQIAA 180 AAATAFHISR PSHSISTIIS PAPLHHTSII LDQDHPFHVP RIMLPNENFQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020549346.1	1e-112	uncharacterized protein LOC105162027 isoform X2
Refseq	XP_020549347.1	1e-112	uncharacterized protein LOC105162027 isoform X3
Swissprot	Q9M0F8	4e-58	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A2Z7BSZ3	1e-113	A0A2Z7BSZ3_9LAMI; NAC domain-containing protein 8
STRING	VIT_11s0016g02880.t01	1e-101	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4057	24	44

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]