PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100206030081

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

C2H2

Protein Properties

Length: 286aa MW: 31884 Da PI: 8.3496

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100206030081	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	80	102	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C+k Fs+k L H++ H Ote100206030081\|100206030081 80 YGCNFCPKKFSNKQALGGHQNAH 102 67******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	4.7E-5	72	106	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.28E-6	77	106	No hit	No description
PROSITE profile	PS50157	10.97	80	107	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	82	102	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MTLHNKTSKG IPDEEVSGNN RKNKSVMKSC PSLDLNQSLE EIDLQLNTFL NSTDPIKLII 60 TKESERQRVQ PELHDEELEY GCNFCPKKFS NKQALGGHQN AHKIEKVGLK RAREGHMANF 120 GYTGNGFNNG ITSFPFPNSF DQISKMTKGP HYPQYMHQLH AHGYPGSMFP LPHESGMMQP 180 FVGFGGFCSS PKHPLKPQIH SPDYPGSIFP MAHESGVVQP FMGNGFFTSP DMLPFMSSER 240 RMGLGASTSG SRSTVVARND GTGKNKQIKD RAIQHQEDEF DLSLKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A022QDD0	1e-32	A0A022QDD0_ERYGU; Uncharacterized protein (Fragment)
STRING	Migut.J01383.1.p	3e-33	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA22891	2	2