PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100206720021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GATA
Protein Properties Length: 161aa    MW: 17278.4 Da    PI: 10.2949
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100206720021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.96.5e-193468135
                          GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                                  C+ Cgt+kTplWR gp g+k+LCnaCG++ rkk++
  Ote100206720021|100206720021 34 CVDCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRR 68
                                  ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.2022864IPR000679Zinc finger, GATA-type
SMARTSM004011.2E-142881IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.24E-122968No hitNo description
CDDcd002022.86E-123368No hitNo description
Gene3DG3DSA:3.30.50.101.1E-153368IPR013088Zinc finger, NHR/GATA-type
PfamPF003209.8E-173468IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403459IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MMDLSDKGSD CEETISQTPT PDRVSSDGSN VKTCVDCGTS KTPLWRGGPA GPKSLCNACG  60
IRSRKKRRAL MGITKEEKKT KKSTSGKTLL NHQSHSSESS TSSSGDSTGK VGNSLNKKLW  120
AFGGDVASQR PRSNTNRRRK LGEEEQAAFL LMALSYGSVY A
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100810.12e-80GATA transcription factor 15-like
SwissprotQ9FJ101e-37GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A4D9A7J81e-78A0A4D9A7J8_SALSN; Uncharacterized protein
STRINGMigut.G00106.1.p1e-69(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19992362
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]