PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100208220081
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 235aa    MW: 26677.1 Da    PI: 10.2864
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100208220081genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2193.8e-06210232223
                                   EETTTTEEESSHHHHHHHHHH.T CS
                       zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                                   +CpdCg+ F  ++nL+ H+ + H
  Ote100208220081|100208220081 210 SCPDCGEIFMKPENLELHQAVrH 232
                                   8******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.6E-4208228IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.367209235IPR007087Zinc finger, C2H2
PROSITE patternPS000280209232IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MAKSRNPRKP TREKKHQHSQ ENDEKPHSWP SVRSLFTCKY LQVQPQQHSV QXXXXXXXXX  60
QKLKQPQQKK PTKETKKKDQ TSDETNKMCK KMKCXXXXXX XSNTKVMQKP EIIPPEENQK  120
LSKRALMAST SSESEASGRS VKTGVTLSDL NXXXXXXXXX XAVASAASPS ISSFRSMPFR  180
KLSGCYECRM VVDPVLGMTR DPSLRNTVCS CPDCGEIFMK PENLELHQAV RHAGN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020547396.12e-70uncharacterized protein LOC105176601
TrEMBLA0A2G9H6451e-61A0A2G9H645_9LAMI; Uncharacterized protein
STRINGVIT_18s0001g03670.t011e-53(Vitis vinifera)