PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100208250021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NAC

Protein Properties

Length: 261aa MW: 30436.5 Da PI: 7.5314

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100208250021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	157.2	7.1e-49	26	164	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k............kvkaeekewyfFskrdkkya 69 +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp k + +ekewyf+++rd+ky+ Ote100208250021\|100208250021 26 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPgKlidihasgxxxxXXAIGEKEWYFYVPRDRKYR 105 79*************************.89***********658999888877764445999********* PP NAM 70 tgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +g+r+nr+t+sgyWkatg d+ + s++ + +glkktLvfy+g+apkg +t+W+m+eyrl Ote100208250021\|100208250021 106 NGDRPNRVTTSGYWKATGADRMIRSENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 164 *******************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	50.636	25	192	IPR003441	NAC domain
SuperFamily	SSF101941	6.28E-51	25	171	IPR003441	NAC domain
Pfam	PF02365	3.4E-25	27	164	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MAIAATMNNQ EDTNSKQDEH ENDVVMPGFR FHPTEEELVE FYLRRKVEGK RFNVELITFL 60 DLYRYDPWEL PGKLIDIHAS GXXXXXXAIG EKEWYFYVPR DRKYRNGDRP NRVTTSGYWK 120 ATGADRMIRS ENFRSIGLKK TLVFYSGKAP KGIRTSWIMN EYRLPHHDTE RLQKPSSNAI 180 DDLHKLVHNY SSSHHQSAAA INHETHQNHF NSNNPTNVPN LLSHFAVSQL PQPPEAAVYS 240 DRLWEWNAMP EGSKDFSNMF K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-51	27	194	19	170	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-51	27	194	19	170	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-51	27	194	19	170	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-51	27	194	19	170	NO APICAL MERISTEM PROTEIN
3swm_A	6e-51	27	194	22	173	NAC domain-containing protein 19
3swm_B	6e-51	27	194	22	173	NAC domain-containing protein 19
3swm_C	6e-51	27	194	22	173	NAC domain-containing protein 19
3swm_D	6e-51	27	194	22	173	NAC domain-containing protein 19
3swp_A	6e-51	27	194	22	173	NAC domain-containing protein 19
3swp_B	6e-51	27	194	22	173	NAC domain-containing protein 19
3swp_C	6e-51	27	194	22	173	NAC domain-containing protein 19
3swp_D	6e-51	27	194	22	173	NAC domain-containing protein 19
4dul_A	5e-51	27	194	19	170	NAC domain-containing protein 19
4dul_B	5e-51	27	194	19	170	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011087598.1	1e-105	NAC domain-containing protein 35
Swissprot	Q9ZVP8	4e-87	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A2U5GF65	1e-104	A0A2U5GF65_SALMI; NAC transcription factor 5
STRING	XP_004301581.1	8e-97	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3888	24	46

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]