PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100208590071

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

G2-like

Protein Properties

Length: 339aa MW: 38462.2 Da PI: 6.6298

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100208590071	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98	6.6e-31	181	235	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LH+rFv++v++LGG++kA Pk+il+lm+ +gLt+ hvkSHLQkYR Ote100208590071\|100208590071 181 KTRIRWTQDLHDRFVDCVNRLGGPDKARPKAILQLMDTEGLTIFHVKSHLQKYRN 235 68****************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.589	178	238	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-28	179	235	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.69E-16	179	235	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.6E-23	181	235	IPR006447	Myb domain, plants
Pfam	PF00249	2.5E-8	185	234	IPR001005	SANT/Myb domain
Pfam	PF14379	6.8E-20	265	312	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MEGVQHPYGF PEFPQNPGAQ KLAAGWEGAL DQSGFVSWPI NTMIGRIGSL APPFYATEVS 60 MGLLHHNLPV NNNNSNNTFR FLEDSSSTDQ YIRHNSHSYE NDQLIMLSES EHLSLLRKNL 120 LGDLDDTNML SSYPPFNLNQ DHRVSQSASP SYCANMNQFR QQPMATPGNN PVSPNVVPSS 180 KTRIRWTQDL HDRFVDCVNR LGGPDKARPK AILQLMDTEG LTIFHVKSHL QKYRNVNHVP 240 ESFEGRSDKK TSSHNLAHID IETGMQMKEA LQLQLDVQRR LHEQLEIQRN LQLSIEEQGK 300 RLKMMLDQQR KTAQNLMEPT VSSSKPTVED PDFVMTSCV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-19	181	238	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-19	181	238	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-19	181	238	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-19	181	238	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-19	181	238	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-19	181	238	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-19	181	238	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-19	181	238	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011078839.1	1e-100	protein PHOSPHATE STARVATION RESPONSE 1 isoform X2
TrEMBL	A0A4D9A4X1	1e-108	A0A4D9A4X1_SALSN; Two-component response regulator ARR-B family
STRING	Migut.J01825.1.p	3e-89	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2491	24	58