PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100209940031

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

HD-ZIP

Protein Properties

Length: 191aa MW: 22327.2 Da PI: 4.703

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100209940031	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.4	2.4e-18	14	67	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++f++eq++ Le Fe++ ++ +++ e A++lgL+ rqV +WFqN+Ra++k Ote100209940031\|100209940031 14 DKRRFSDEQIRCLEVIFESETKLEPRKKVEVARELGLQPRQVAIWFQNKRARWK 67 5679*************************************************9 PP
2	HD-ZIP_I/II	116.2	1.9e-37	14	105	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLek 82 krr+s+eq+++LE Fe+e+kLep++Kve+areLglqprqva+WFqn+RAR+k+k++Ek+y+ L ++y++l+++ e+L+k Ote100209940031\|100209940031 14 DKRRFSDEQIRCLEVIFESETKLEPRKKVEVARELGLQPRQVAIWFQNKRARWKSKHIEKEYSILLANYNSLAAQFESLKK 94 59***************************************************************************** PP HD-ZIP_I/II 83 eveeLreelke 93 e+++L +l+e Ote100209940031\|100209940031 95 EKNSLLLQLEE 105 ***988876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.0E-18	7	76	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.248	9	69	IPR001356	Homeobox domain
SMART	SM00389	1.9E-16	11	73	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.76E-17	11	79	IPR009057	Homeodomain-like
Pfam	PF00046	1.1E-15	14	67	IPR001356	Homeobox domain
CDD	cd00086	1.57E-13	15	70	No hit	No description
PRINTS	PR00031	6.9E-6	40	49	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	44	67	IPR017970	Homeobox, conserved site
PRINTS	PR00031	6.9E-6	49	65	IPR000047	Helix-turn-helix motif
Pfam	PF02183	7.8E-11	69	108	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MQKMLEKRKK GKNDKRRFSD EQIRCLEVIF ESETKLEPRK KVEVARELGL QPRQVAIWFQ 60 NKRARWKSKH IEKEYSILLA NYNSLAAQFE SLKKEKNSLL LQLEELKSEE GGRCSDGESS 120 ECVKVCDLEV RNDLLSVSDD DSCMKAELLQ FHDENELLTM VETASDWGSL ESDEIDIINT 180 QSSGEWWDFW S

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269\|PubMed:15604708, ECO:0000269\|PubMed:8771791}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00320	DAP	Transfer from AT2G46680	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682, ECO:0000269\|PubMed:8771791}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011093009.1	7e-60	homeobox-leucine zipper protein ATHB-12
Swissprot	P46897	3e-47	ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBL	A0A2G9H743	6e-66	A0A2G9H743_9LAMI; Transcription factor HEX
STRING	GLYMA16G02390.1	2e-56	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2041	23	63

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhou SF, et al. Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis. New Phytol., 2015. 208(1): p. 188-97 [PMID:25919792]