PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100210040051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 199aa    MW: 22774.4 Da    PI: 7.1575
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100210040051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.000356991123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  + C+ C + Fs++  L  H+++H
  Ote100210040051|100210040051 69 FGCSFCEREFSNSQALGDHQNVH 91
                                  56*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.6E-56795IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.53E-66796No hitNo description
PROSITE profilePS5015711.9056996IPR007087Zinc finger, C2H2
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MPQSEESPEE EKEFRKIYET TSSDVVMLDL KLVDNELMNK ENPSSNLHKL NSPGSLDKGK  60
QEILKLKTFG CSFCEREFSN SQALGDHQNV HKQERALAKR HHNTVDMTTS PGGAIPAYQG  120
YSYYPNSTSH YCIPNYYVGF NRSHMIHKPH PYHYDHQLSL SSSAIYHSTR ENVSRAYFMN  180
PLSTTIKGDN EVMIRNING
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086308.12e-26zinc finger protein 3-like
TrEMBLA0A4D9B2P51e-32A0A4D9B2P5_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39672138