PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100210880041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family NF-YB
Protein Properties Length: 143aa    MW: 16302.9 Da    PI: 7.9389
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100210880041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB125.42.2e-39381102597
                         NF-YB  25 akiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                                    kisk+aket+qecvsefisfvt+easdkc+rekrkt+ngdd++wal++lGf+dy ++lk yl++yre+ege+
  Ote100210880041|100210880041  38 XKISKEAKETMQECVSEFISFVTGEASDKCHREKRKTVNGDDICWALGSLGFDDYGDSLKRYLARYREAEGER 110
                                   79********************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.19E-2837122IPR009072Histone-fold
Gene3DG3DSA:1.10.20.108.8E-3738127IPR009072Histone-fold
PfamPF008081.6E-183884IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006159.1E-184866No hitNo description
PROSITE patternPS0068505167IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006159.1E-186785No hitNo description
PRINTSPR006159.1E-1886104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MRRRRRREGA GPPPPDRQCR EDHEAXXXXX XXXXXXXXKI SKEAKETMQE CVSEFISFVT  60
GEASDKCHRE KRKTVNGDDI CWALGSLGFD DYGDSLKRYL ARYREAEGER AAANQSRAAA  120
DGRGGEDATA PFSFNLMEEK RRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B3e-30391052692Transcription factor HapC (Eurofung)
4g92_B3e-30391052692Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079712.14e-47nuclear transcription factor Y subunit B-5-like
SwissprotO822482e-39NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A4D8YJR52e-47A0A4D8YJR5_SALSN; Uncharacterized protein
TrEMBLA0A4D9A2D71e-47A0A4D9A2D7_SALSN; Uncharacterized protein
STRINGAquca_017_00275.13e-44(Aquilegia coerulea)
STRINGMigut.D00186.1.p2e-44(Erythranthe guttata)
STRINGXP_010259679.16e-44(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]