PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100212130111

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

SRS

Protein Properties

Length: 147aa MW: 15274 Da PI: 4.7881

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100212130111	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	85.4	1.4e-26	28	90	91	154
DUF702 91 lssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +ss+++ l ++slP +v+++avf+cv+v+++ddg++e+aYq++v igGhvfkG+LydqG e+ Ote100212130111\|100212130111 28 TSSSHQDAGL-KESLPGQVRAPAVFKCVKVTAIDDGDDEYAYQAVVRIGGHVFKGFLYDQGFEA 90 3444433333.455***********************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	6.1E-24	29	89	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	6.4E-30	41	87	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence Send to blast
PRLGGASQXX XXXXXXXXXX XXXRSFDTSS SHQDAGLKES LPGQVRAPAV FKCVKVTAID 60 DGDDEYAYQA VVRIGGHVFK GFLYDQGFEA REGFPDISEL QLGAVGGGSG GGRNGASSSH 120 PVLDPSDIFA ASGGGLLGGS SYGNQIN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008363042.2	1e-57	protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	5e-42	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A498KCA6	4e-56	A0A498KCA6_MALDO; Uncharacterized protein
STRING	XP_008363042.1	4e-57	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7655	23	31

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]