PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100212950011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 253aa    MW: 28501.7 Da    PI: 8.2022
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100212950011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65.3e-171461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+WT+eEd++l+ +++ +G g+W++ ++  g+ R++k+c++rw +yl
  Ote100212950011|100212950011 14 KGAWTKEEDQRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                                  79******************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-24564IPR009057Homeodomain-like
PROSITE profilePS5129422.94965IPR017930Myb domain
SMARTSM007172.0E-131363IPR001005SANT/Myb domain
PfamPF002491.6E-151461IPR001005SANT/Myb domain
SuperFamilySSF466894.49E-221587IPR009057Homeodomain-like
CDDcd001671.17E-101661No hitNo description
PROSITE profilePS500904.8556289IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.8E-106588IPR009057Homeodomain-like
SMARTSM007171866204IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLISYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TEEEDEIIIK LHSLLGNNRG IDPQTHRQLN AAAPAAAPPS VPANIDFTNS  120
TPPPSKENIT PNDPTTDNSS SVDNTKCSST TTEESXXXXX XXXXXXXKEE NTAAELDLNL  180
SIGLGVPSQQ KYRKIAPFRE FLRPDXXXXX XXXXXXXXXX XXXRAMCLCW QLGFQKGQLC  240
ANCQSYNGMY RYC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-1713872699MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012854909.12e-94PREDICTED: myb-related protein 330
SwissprotP813951e-77MYB30_ANTMA; Myb-related protein 330
TrEMBLA0A2G9GK161e-101A0A2G9GK16_9LAMI; Transcription factor, Myb superfamily
STRINGMigut.C01291.1.p9e-94(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]