PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100212970251

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

G2-like

Protein Properties

Length: 454aa MW: 49833.3 Da PI: 5.2911

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100212970251	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108	5e-34	276	330	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe Fveav++LGGse+AtPk +l+lmkv+gLt++hvkSHLQkYR+ Ote100212970251\|100212970251 276 KQRMRWTPELHETFVEAVNKLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRT 330 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.521	273	333	IPR017930	Myb domain
SuperFamily	SSF46689	4.12E-18	274	330	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.1E-31	275	332	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-25	276	330	IPR006447	Myb domain, plants
Pfam	PF00249	1.8E-10	278	329	IPR001005	SANT/Myb domain
Pfam	PF14379	2.9E-24	361	405	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MEAKHAMPIQ SSGSRQICSI GASTSISASF PVPPTALEEM YPRFSESQQV PLERELTQLP 60 PTAVSSLSSN SGAVGHIFSS SSGFSTDLHF SSTQQHQEKH PKQSPFISQS SSSGKSVNLP 120 HSVDSQVLQS TASSHFNKEN NGTWCTDTLP DYLDFPMSTP TQSSQLYGSN STGITIPQED 180 LGKSNDWQDW ADQLITDNDA LTADWSGLLA DTSVGDPQQN LEVIFLSSSF YHALLIPHQC 240 TSISNQQLHK PQQQPITPGE ICINGTQSSS NAAPAKQRMR WTPELHETFV EAVNKLGGSE 300 RATPKGVLKL MKVEGLTIYH VKSHLQKYRT ARYKPETAEG SLEQKSASIE DLSSLDLKTG 360 IEITEALRLQ MEVQKRLHEQ LEIQRNLQLR IEEQGRYLQM MFEKSGMEMA KGATSTNSPT 420 EDDSAVEGEK TNAEGPGENS QPPFPPAKRA KLTD

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MEAKHAMPIQ SSGSRQICSI GASTSISASF PVPPTALEEM YPRFSESQQV PLERELTQLP  60
PTAVSSLSSN SGAVGHIFSS SSGFSTDLHF SSTQQHQEKH PKQSPFISQS SSSGKSVNLP  120
HSVDSQVLQS TASSHFNKEN NGTWCTDTLP DYLDFPMSTP TQSSQLYGSN STGITIPQED  180
LGKSNDWQDW ADQLITDNDA LTADWSGLLA DTSVGDPQQN LEVIFLSSSF YHALLIPHQC  240
TSISNQQLHK PQQQPITPGE ICINGTQSSS NAAPAKQRMR WTPELHETFV EAVNKLGGSE  300
RATPKGVLKL MKVEGLTIYH VKSHLQKYRT ARYKPETAEG SLEQKSASIE DLSSLDLKTG  360
IEITEALRLQ MEVQKRLHEQ LEIQRNLQLR IEEQGRYLQM MFEKSGMEMA KGATSTNSPT  420
EDDSAVEGEK TNAEGPGENS QPPFPPAKRA KLTD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-31	275	334	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-31	275	334	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-31	275	334	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-31	275	334	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-31	275	334	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-31	275	334	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-31	275	334	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-31	275	334	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020550480.1	0.0	protein PHOSPHATE STARVATION RESPONSE 1 isoform X1
TrEMBL	A0A4D8YMM3	0.0	A0A4D8YMM3_SALSN; Uncharacterized protein
STRING	Migut.D00466.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2753	23	49