PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100213510161
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family LSD
Protein Properties Length: 166aa    MW: 18522.6 Da    PI: 8.5604
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100213510161genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD147.23.5e-15107130124
                       zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdt 24 
                                   Cg+C+t+L+YP+GApsV+Ca+C+ 
  Ote100213510161|100213510161 107 CGNCHTTLMYPYGAPSVKCAVCQY 130
                                   **********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010532.5E-11104133IPR005735Zinc finger, LSD1-type
PfamPF069434.6E-14107131IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MSVAPYVIPS PQFPLKVNFS DFSYQYRDAI LAIAVNVMLD LMNLNLLNGD GPTDMWRLPY  60
TLDVYSWCFK CEMLMLSHSK PSASYWVYKK TNYQKTITTA NIAHINCGNC HTTLMYPYGA  120
PSVKCAVCQY ITNVNMGNVR VPLPMHRPIG PASPASMPSA STVSQP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2H5N0N91e-30A0A2H5N0N9_CITUN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16792467