PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100214420141
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family WOX
Protein Properties Length: 210aa    MW: 23981.2 Da    PI: 10.4399
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100214420141genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox44.52.6e-142451957
                                  HHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                      Homeobox 19 Fek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                  +++ +r+p+a++++++A+kl    +++ ++V++WFqN++a++++
  Ote100214420141|100214420141  2 YRRgTRTPTADQIQQIAAKLrrfgKIEGKNVFYWFQNHKARDRQ 45
                                  55559************************************996 PP
2Wus_type_Homeobox82.55.1e-271471965
             Wus_type_Homeobox 19 lyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                                  +y++G+rtP++++iq+i+a+L+++Gkie+kNVfyWFQN+kaR+rqk+
  Ote100214420141|100214420141  1 MYRRGTRTPTADQIQQIAAKLRRFGKIEGKNVFYWFQNHKARDRQKK 47
                                  8********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.847146IPR001356Homeobox domain
PfamPF000469.2E-12245IPR001356Homeobox domain
SuperFamilySSF466891.27E-7652IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-5645IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MYRRGTRTPT ADQIQQIAAK LRRFGKIEGK NVFYWFQNHK ARDRQKKRRQ LQLLPHPSKQ  60
SGLSRKYLGM DQQPGNVTTS SKSSTSSKCE MELQQQSTET ANRTTKSSCR ALDLSSSMSP  120
NVSMNRTMDQ QENAYPFVAL NKLLTPKKHD DVIIESEIKE NRTLELFPVR SASLMSSTFT  180
CSSKEEMRDV SSVGTDLVPS QFFEFLPTKN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070619.14e-55WUSCHEL-related homeobox 1-like
TrEMBLA0A4D9BQP03e-56A0A4D9BQP0_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46812342