PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100214620031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family M-type_MADS
Protein Properties Length: 252aa    MW: 28979.4 Da    PI: 9.8763
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100214620031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.22.5e-14948140
                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                                  k+i +++ r+ tf +R   ++KKA+ELS+LC++e+ vi+ 
  Ote100214620031|100214620031  9 KQILSERVRKSTFKRRVDSLFKKAHELSILCGVEIIVIVR 48
                                  56788999******************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.96E-17170IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.46147IPR002100Transcription factor, MADS-box
SMARTSM004325.5E-15160IPR002100Transcription factor, MADS-box
CDDcd002664.51E-18362No hitNo description
PfamPF003191.9E-141151IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MPRHKTKHKQ ILSERVRKST FKRRVDSLFK KAHELSILCG VEIIVIVRDP KESHPSVWPS  60
HDRAMNGVMK FLARSKEAGP KKMVLHEKFL NDKLKGLTER LLKLRKKNEE TEIGFLMNRL  120
SEDGAFNELD MRQLIGLDQF VDEKLKKLES RYDELVGMQN QVSHTDNSRH FQMTTPAIVR  180
MENASVDFGT KSIAALAGDM TDERWFGNGM PCIQNSFGMS RGFNEVAVPF IEGNQDAVPN  240
EFGRVWPTIF YP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A4D8ZWV51e-112A0A4D8ZWV5_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129