PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100216000021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

HSF

Protein Properties

Length: 236aa MW: 26429.2 Da PI: 7.5085

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100216000021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	119.9	1.4e-37	10	102	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 Fl+k+y++++d++ +++isw+e g++fvv+++ efak++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF+ Ote100216000021\|100216000021 10 FLTKTYHLVDDPASDDVISWNEAGTTFVVWKTAEFAKDLLPNYFKHNNFSSFVRQLNTYGFRKTVPDK---------WEFA 81 9*************************************************************9999......... PP ESXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 83 hksFkkgkkellekikrkkse 103 +++Fk+g+kell +i+r+k++ Ote100216000021\|100216000021 82 NENFKRGQKELLAQIRRRKTA 102 ****************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.9E-38	3	93	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	4.5E-60	6	99	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.63E-34	7	99	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	4.6E-20	10	33	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	4.4E-33	10	99	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.6E-20	48	60	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.6E-20	61	73	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009408	Biological Process	response to heat
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MAHRSVPAPF LTKTYHLVDD PASDDVISWN EAGTTFVVWK TAEFAKDLLP NYFKHNNFSS 60 FVRQLNTYGF RKTVPDKWEF ANENFKRGQK ELLAQIRRRK TATNEKAGAN DNVASPAISG 120 DDLGSSSTSS PDSKNPGSLE TQVSAQLADL SGENEKLRKN NEMLSSELAQ TKKQCDELIA 180 FLTQCVKVAP EQISRIMNLG GAXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	5e-27	5	104	16	125	Heat shock factor protein 1
5d5u_B	6e-27	5	101	25	131	Heat shock factor protein 1
5d5v_B	6e-27	5	101	25	131	Heat shock factor protein 1
5d5v_D	6e-27	5	101	25	131	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099137.1	1e-121	heat shock factor protein HSF24
Swissprot	P22335	2e-98	HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBL	A0A2G9GXX1	1e-124	A0A2G9GXX1_9LAMI; Uncharacterized protein
STRING	EOX91407	1e-111	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9991	21	27

Publications ? help Back to Top
Scharf KD, et al. Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF. EMBO J., 1990. 9(13): p. 4495-501 [PMID:2148291]