PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100216830041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GATA
Protein Properties Length: 340aa    MW: 37149.6 Da    PI: 8.4939
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100216830041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.66.2e-17249282134
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                   C +C  tkTp+WR gp g+k+LCnaCG++y++ +
  Ote100216830041|100216830041 249 CMHCEITKTPQWRAGPMGPKSLCNACGVRYKSGR 282
                                   99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577169.03E-12242281No hitNo description
PROSITE profilePS5011411.385243279IPR000679Zinc finger, GATA-type
SMARTSM004011.0E-14243304IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.4E-14247280IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.01E-10248282No hitNo description
PfamPF003209.6E-15249282IPR000679Zinc finger, GATA-type
PROSITE patternPS003440249274IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEPNMVDEID CGNFFDQIDD LIEFPPENEC GGVGNFVSCG DSKDFPSMWS DALPDSDPFF  60
SNGSSTSDLS AELSVPVSIG VRGYRATGMA LGFCGGLLFR WRDDHRKGDQ GPLTQPIPNL  120
EPRFXXXXXX XXXXXXXXXX XSSSCSGGKT MSLSPTHRSA QRARSKRPRP PTFNPRLPIQ  180
LISPSPSFTE APAPPKFVPT GFSSESDNVA ESPPLKKVPK TAGVEPKKKK IKVTLQEEET  240
APQQAIRKCM HCEITKTPQW RAGPMGPKSL CNACGVRYKS GRXXXXXXXX XXXXXPAASP  300
TFVPSLHSNS HKKVVEMRTK LGAEANVAAT TKNPEHSSNP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076972.11e-102GATA transcription factor 8-like
RefseqXP_011076974.11e-102GATA transcription factor 8-like
TrEMBLA0A2G9GV451e-103A0A2G9GV45_9LAMI; GATA transcription factor
STRINGXP_009628969.12e-87(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23452358