PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100218370041

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

SRS

Protein Properties

Length: 172aa MW: 17349.3 Da PI: 8.4741

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100218370041	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	94.3	2.5e-29	5	105	64	153
DUF702 64 aasaaeaaskrkrelkskkqsalsstklssaesk.keletss..........lPeevsseavfrcvrvssvddgeeelaYq 133 +s++++ sk++r ++++++ s+t++s+++++ ++++tss lP +v+++avf+cvrv++vddg +e+aYq Ote100218370041\|100218370041 5 GSSQSTSGSKKPRLGGASQTTTGSHTSTSNNTTPaRSFDTSSshqdasfkesLPGQVRAPAVFKCVRVTAVDDGADEYAYQ 85 4556777888888887777777777777766554156666668889999999*************************** PP DUF702 134 tavsigGhvfkGiLydqGle 153 ++v igGh+fkG+LydqG+e Ote100218370041\|100218370041 86 ASVRIGGHIFKGFLYDQGVE 105 ****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.1E-26	6	105	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	5.8E-29	57	104	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
VATAGSSQST SGSKKPRLGG ASQTTTGSHT STSNNTTPAR SFDTSSSHQD ASFKESLPGQ 60 VRAPAVFKCV RVTAVDDGAD EYAYQASVRI GGHIFKGFLY DQGVEGRNGL PNLSELHLSG 120 GGGGGRNGGG SSSPPPVLDH NIYGGGGASS GGLLGGSTYG NXXXXXXXXX XL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012835509.1	8e-62	PREDICTED: uncharacterized protein LOC105956208
Swissprot	Q94CK9	3e-42	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A4D9C4A5	3e-65	A0A4D9C4A5_SALSN; Uncharacterized protein
STRING	Migut.D00656.1.p	6e-64	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7655	23	31

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]