PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100219970011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

Protein Properties

Length: 434aa MW: 48499.7 Da PI: 6.6747

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100219970011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	61.8	1.1e-19	78	167	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+k+l++s+v++ ++ lp +f+++h + ++++++le+e+g+++ +k+i +k++ l++GW++Fv n+L egD +v Ote100219970011\|100219970011 78 FVKALVRSHVGSCFWMGLPVPFCKSHLPD--KDTEVILENENGEEFPIKYIANKTG----LSAGWRKFVAGNRLVEGDALV 152 89**********************534..5679***********777776....***************** PP EEE-SSSEE..EEEEE- CS B3 82 Fkldgrsefelvvkvfr 98 F+l+g+ + +v +r Ote100219970011\|100219970011 153 FQLTGTCRL--KVYTIR 167 9985544..666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.96E-22	72	169	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.1E-21	73	169	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.86E-24	76	167	No hit	No description
Pfam	PF02362	1.6E-17	78	168	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.437	78	169	IPR003340	B3 DNA binding domain
SMART	SM01019	4.0E-21	78	169	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MSDETIQHVY GSHGLACDEG KETMPVALQL GTPDTGGASR SKEVAKGGGL GSPVPMKSPT 60 MIRAEEFLLS LGNDQPSFVK ALVRSHVGSC FWMGLPVPFC KSHLPDKDTE VILENENGEE 120 FPIKYIANKT GLSAGWRKFV AGNRLVEGDA LVFQLTGTCR LKVYTIRANN LTEVDGALSL 180 LILDSQTKQN DAGTTDVQNK KKKRPKSLPL TVLQKKKQKA GRVGEEHSGN DSDEVASEVV 240 EGATAKFPAS SSNFKDVKTF DAFHIMVNGV CIDSDLPEDI RRKYYELCCT KDSFLHDRLX 300 XXXXXXXXXX XXXXXXXXXX XIRGCKVTTP KKDFEVWEKS LRSFELLGLN VGFLRSRVHQ 360 LLRLAFETEG GSEMRRFHEV KEENKRAVDE IQKLEAKLGE LKEVSATCDH EIENLRMKAE 420 SYEVKFQQEV DAPW

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MSDETIQHVY GSHGLACDEG KETMPVALQL GTPDTGGASR SKEVAKGGGL GSPVPMKSPT  60
MIRAEEFLLS LGNDQPSFVK ALVRSHVGSC FWMGLPVPFC KSHLPDKDTE VILENENGEE  120
FPIKYIANKT GLSAGWRKFV AGNRLVEGDA LVFQLTGTCR LKVYTIRANN LTEVDGALSL  180
LILDSQTKQN DAGTTDVQNK KKKRPKSLPL TVLQKKKQKA GRVGEEHSGN DSDEVASEVV  240
EGATAKFPAS SSNFKDVKTF DAFHIMVNGV CIDSDLPEDI RRKYYELCCT KDSFLHDRLX  300
XXXXXXXXXX XXXXXXXXXX XIRGCKVTTP KKDFEVWEKS LRSFELLGLN VGFLRSRVHQ  360
LLRLAFETEG GSEMRRFHEV KEENKRAVDE IQKLEAKLGE LKEVSATCDH EIENLRMKAE  420
SYEVKFQQEV DAPW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099150.1	0.0	B3 domain-containing protein Os01g0234100
TrEMBL	A0A4D9AUY2	0.0	A0A4D9AUY2_SALSN; Uncharacterized protein
STRING	Migut.H00442.1.p	1e-175	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7204	23	28