PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100219970071
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family B3
Protein Properties Length: 169aa    MW: 18207.9 Da    PI: 7.4545
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100219970071genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.73e-2078162195
                                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                                   f+k+l++s+v++  ++ lp +f+++h  +  ++++++le+e+g+++ +k+i +k++    l++GW++Fv  n+L egD +v
  Ote100219970071|100219970071  78 FVKALVRSHVGSCFWMGLPVPFCKSHLPD--KDTEVILENENGEEFPIKYIANKTG----LSAGWRKFVAGNRLVEGDALV 152
                                   89************************534..5679***************777776....********************* PP

                                   EEE-SSSEE..EEE CS
                            B3  82 Fkldgrsefelvvk 95 
                                   F+l+g+ +    +k
  Ote100219970071|100219970071 153 FQLTGTCR----LK 162
                                   **987433....34 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-2173164IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-2274163IPR015300DNA-binding pseudobarrel domain
CDDcd100172.34E-2676164No hitNo description
PROSITE profilePS5086312.88778169IPR003340B3 DNA binding domain
PfamPF023629.4E-1878161IPR003340B3 DNA binding domain
SMARTSM010191.4E-1978169IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MSDETIQHVY GSHGLACDEG KETMPVALQL GTPDTGGASR SKEVAKGGGL GSPVPMKSPT  60
MIRAEEFLLS LGNDQPSFVK ALVRSHVGSC FWMGLPVPFC KSHLPDKDTE VILENENGEE  120
FPIKYIANKT GLSAGWRKFV AGNRLVEGDA LVFQLTGTCR LKVRKSGMI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099150.17e-65B3 domain-containing protein Os01g0234100
SwissprotQ5KQI49e-32Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBLA0A4D9AUY23e-63A0A4D9AUY2_SALSN; Uncharacterized protein
STRINGMigut.K00763.1.p4e-57(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2177422
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]