PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100220130011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

GRAS

Protein Properties

Length: 237aa MW: 26421.3 Da PI: 4.7154

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100220130011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	78.3	1.3e-24	1	92	6	107
GRAS 6 lecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 ++cAeav++++++la+al++++ la +++ +m+++a+yf+eALa+r++r l+ ++ ++ + + + + f+e Ote100220130011\|100220130011 1 MACAEAVQQENFKLAEALVKNIGFLAVSQAGAMRKVATYFAEALARRIYR----LC----LTN--AQDFAFNDMLQMHFYE 71 68**********************************************....22....222..2234455555567* PP GRAS 87 vsPilkfshltaNqaIleave 107 ++P+lkf+h+taNqaIlea++ Ote100220130011\|100220130011 72 TCPYLKFAHFTANQAILEAFA 92 *******************96 PP
2	GRAS	136	4.1e-42	93	232	133	273
GRAS 133 asRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrl 213 a Rp+gpps+R+T+vg+p++++++ l+e+g++La++Ae+++v+fe++ lva++l+dl+ L++++gE++aVn++l+lh l Ote100220130011\|100220130011 93 ALRPGGPPSFRLTAVGPPSYDNTDHLQEVGRKLAELAETINVEFEYRGLVANSLADLTAPLLQIREGETVAVNSILELHPL 173 58******************************************************************************* PP GRAS 214 ldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273 l+ k++++++++vveqea+hn+ Flerf+eal+yys+lfdsle+ Ote100220130011\|100220130011 174 LAXXXXXXX-XXXXXXXXKEVKAEILTVVEQEANHNGDVFLERFTEALHYYSTLFDSLES 232 88877777.899999*****************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	4.6E-22	1	92	IPR005202	Transcription factor GRAS
PROSITE profile	PS50985	27.275	1	237	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.4E-39	93	232	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MACAEAVQQE NFKLAEALVK NIGFLAVSQA GAMRKVATYF AEALARRIYR LCLTNAQDFA 60 FNDMLQMHFY ETCPYLKFAH FTANQAILEA FAALRPGGPP SFRLTAVGPP SYDNTDHLQE 120 VGRKLAELAE TINVEFEYRG LVANSLADLT APLLQIREGE TVAVNSILEL HPLLAXXXXX 180 XXXXXXXXXX KEVKAEILTV VEQEANHNGD VFLERFTEAL HYYSTLFDSL ESCSNGV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	2e-31	3	230	25	276	Protein SCARECROW
5b3h_D	2e-31	3	230	25	276	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070609.1	1e-127	DELLA protein GAI1
Swissprot	Q8S4W7	1e-116	GAI1_VITVI; DELLA protein GAI1
TrEMBL	A0A2G9HQV2	1e-125	A0A2G9HQV2_9LAMI; Uncharacterized protein
STRING	Migut.E00445.1.p	1e-120	(Erythranthe guttata)