PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100220900051

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

LBD

Protein Properties

Length: 168aa MW: 18163.3 Da PI: 7.208

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100220900051	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	84.4	1.6e-26	7	68	1	62
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslv 62 +CaaCk lrrkC+++Cv+apyfp ++p+kf nvhk+FGasnv+kll++l+ +reda++sl+ Ote100220900051\|100220900051 7 PCAACKCLRRKCTQECVFAPYFPPDNPQKFTNVHKVFGASNVSKLLNELNAAQREDAVNSLA 68 7***********************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.2	6	141	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.2E-26	7	68	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MSSSNSPCAA CKCLRRKCTQ ECVFAPYFPP DNPQKFTNVH KVFGASNVSK LLNELNAAQR 60 EDAVNSLAXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXSASRFG GGQEGVGHVY 120 WTIGDVANNQ SPGFRAATFQ LWSPALSDGA IQCAADDGAA DGNTARGP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-29	4	68	8	72	LOB family transfactor Ramosa2.1
5ly0_B	1e-29	4	68	8	72	LOB family transfactor Ramosa2.1