PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100221890031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family G2-like
Protein Properties Length: 451aa    MW: 50467.9 Da    PI: 7.8972
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100221890031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like84.79.4e-27123176155
                       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                   k+++ WtpeLH+rFv aveqL G++kA+P++ile+m+v +Lt+++++SHLQkYR+
  Ote100221890031|100221890031 123 KAKVGWTPELHRRFVTAVEQL-GIDKAVPSRILEIMGVACLTRHNIASHLQKYRS 176
                                   67899****************.********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.76120179IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.6E-27120180IPR009057Homeodomain-like
SuperFamilySSF466892.87E-17121179IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-25123177IPR006447Myb domain, plants
PfamPF002495.5E-6127175IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MLAVKSERNE GESEMRGFSV EENEFVGGED LLDAIDFDGF FAGFSDGDVL PDLEMDHEAV  60
AELSSSESEN KSGKSENAAP DSDVGLESPV KIPEKETVST MAEPESVRNR ASKEAERSGK  120
KKKAKVGWTP ELHRRFVTAV EQLGIDKAVP SRILEIMGVA CLTRHNIASH LQKYRSQRKH  180
LQAREAEAAR WSRRRQIYGS ATAPTQLNHW IAPAMGFPPV TPVPHYRPLH VWGHPSVDQS  240
LMYTWPKHVA PPSHAWPPPL ADPSFWHPPH PYVSLVSNPT PPFLWSIDLP TDTYTYLLXX  300
XXXXXXXXLF CTNIPQTFPP AAAAGGDAPT AQTVPRTACD VHPVIFILLH KLYAFELRLK  360
NRIIEGEYRC SHRRRNNKAM VAAAIGAKAT VYGQCDTRTT TPRRIENTSN LTIYLLINQL  420
LASPSLRKIN CELEIHKNAN ICEFASTKKR Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-14121175357ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that functions with GLK2 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:17533111, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269|PubMed:11828027, ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:17533111, ECO:0000269|PubMed:18643989, ECO:0000269|PubMed:19376934, ECO:0000269|PubMed:19383092, ECO:0000269|PubMed:19726569, ECO:0000269|PubMed:23459204}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. Repressed by BZR2. {ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:21214652}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022877228.14e-92probable transcription factor GLK1 isoform X1
SwissprotQ9SIV33e-62GLK1_ARATH; Transcription activator GLK1
TrEMBLA0A4D8ZR692e-93A0A4D8ZR69_SALSN; Uncharacterized protein
STRINGXP_009601765.14e-81(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25322356
Publications ? help Back to Top
  1. Leister D,Kleine T
    Definition of a core module for the nuclear retrograde response to altered organellar gene expression identifies GLK overexpressors as gun mutants.
    Physiol Plant, 2016. 157(3): p. 297-309
    [PMID:26876646]
  2. Nagatoshi Y, et al.
    GOLDEN 2-LIKE transcription factors for chloroplast development affect ozone tolerance through the regulation of stomatal movement.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(15): p. 4218-23
    [PMID:27035938]
  3. Tokumaru M, et al.
    Ubiquitin-Proteasome Dependent Regulation of the GOLDEN2-LIKE 1 Transcription Factor in Response to Plastid Signals.
    Plant Physiol., 2017. 173(1): p. 524-535
    [PMID:27821720]
  4. Ni F, et al.
    Turnip Yellow Mosaic Virus P69 Interacts with and Suppresses GLK Transcription Factors to Cause Pale-Green Symptoms in Arabidopsis.
    Mol Plant, 2017. 10(5): p. 764-766
    [PMID:27964999]
  5. Wang H,Seo JK,Gao S,Cui X,Jin H
    Silencing of AtRAP, a target gene of a bacteria-induced small RNA, triggers antibacterial defense responses through activation of LSU2 and down-regulation of GLK1.
    New Phytol., 2017. 215(3): p. 1144-1155
    [PMID:28656601]