PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100223450171
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB
Protein Properties Length: 192aa    MW: 22053.8 Da    PI: 9.115
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100223450171genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.43.9e-191966148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  rg+WT+eEd +l+dav  +G + W+tIa++ g+ R++k+c++rw +yl
  Ote100223450171|100223450171 19 RGSWTAEEDRKLADAVGVHGAKKWTTIAARAGLLRCAKSCRLRWMNYL 66
                                  89******************************99************97 PP
2Myb_DNA-binding53.46.1e-1772117148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg+++ +E++l+++++k+lG++ W++Ia++++ gRt++++k++w+ +l
  Ote100223450171|100223450171  72 RGNMSDQEEDLIIRLHKLLGNR-WSLIAARLP-GRTDNEIKNYWNYHL 117
                                   899*******************.*********.***********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.4141470IPR017930Myb domain
SuperFamilySSF466895.5E-2916113IPR009057Homeodomain-like
SMARTSM007178.9E-151868IPR001005SANT/Myb domain
PfamPF002494.2E-171966IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-232073IPR009057Homeodomain-like
CDDcd001671.83E-102166No hitNo description
SMARTSM007178.0E-1771119IPR001005SANT/Myb domain
PROSITE profilePS5129420.42471121IPR017930Myb domain
PfamPF002491.3E-1572117IPR001005SANT/Myb domain
CDDcd001678.90E-1174117No hitNo description
Gene3DG3DSA:1.10.10.601.9E-2474120IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010090Biological Processtrichome morphogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0048629Biological Processtrichome patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MADTLIKEKQ RQARKGINRG SWTAEEDRKL ADAVGVHGAK KWTTIAARAG LLRCAKSCRL  60
RWMNYLRPNI KRGNMSDQEE DLIIRLHKLL GNRWSLIAAR LPGRTDNEIK NYWNYHLRKK  120
RWEEGVLVAG ISSEEMGSKS DQQSGEEKGT SVSSKGVENS EESEAKFDDF DDFFDFSNEN  180
PSTLEWVTKF LQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27191207107B-MYB
1h8a_C5e-271712025127MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079754.16e-95transcription factor MYB114-like
SwissprotQ388505e-50MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A0K1ETI21e-93A0A0K1ETI2_TECGR; MYB transcription factor 3
STRINGMigut.I01072.1.p1e-85(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]