PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100223480081

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

LBD

Protein Properties

Length: 115aa MW: 12499.9 Da PI: 4.7782

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100223480081	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	44.6	4.3e-14	19	64	55	100
DUF260 55 edamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +a++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el++++++ Ote100223480081\|100223480081 19 IHAVNSLAYEAEARLKDPVYGCVGAISVLQRQVFNLQKELDATNAN 64 5799************************************998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.306	1	65	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.0E-12	19	62	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 115 aa Download sequence Send to blast
MSAWLHIRAI FSAGGADEIH AVNSLAYEAE ARLKDPVYGC VGAISVLQRQ VFNLQKELDA 60 TNANIMRFAG GNGPPFSDDP NQPRRDPEYG SGLSDPNAGY SLPYYWPRKG EDGGI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-21	21	72	67	118	LOB family transfactor Ramosa2.1
5ly0_B	6e-21	21	72	67	118	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012850821.1	2e-32	PREDICTED: protein LATERAL ORGAN BOUNDARIES
Swissprot	Q8L8Q3	1e-23	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A4D8ZXG9	1e-29	A0A4D8ZXG9_SALSN; Uncharacterized protein
TrEMBL	A0A4D9A4C8	1e-29	A0A4D9A4C8_SALSN; Uncharacterized protein
STRING	Migut.H00081.1.p	7e-32	(Erythranthe guttata)

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]