PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100223550071
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 150aa    MW: 17624.7 Da    PI: 5.0501
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100223550071genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.8e-16956148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+W+++Ed +lv +v+++G ++W+ Ia+  g++Rt+k+c++rw++yl
  Ote100223550071|100223550071  9 KGPWSEQEDVQLVFYVNLFGDRRWDFIAKVSGLKRTGKSCRLRWLNYL 56
                                  79********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.682460IPR017930Myb domain
SMARTSM007171.4E-13858IPR001005SANT/Myb domain
PfamPF002493.1E-15956IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-201071IPR009057Homeodomain-like
SuperFamilySSF466891.49E-171072IPR009057Homeodomain-like
CDDcd001671.93E-101156No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MEKEEVVRKG PWSEQEDVQL VFYVNLFGDR RWDFIAKVSG LKRTGKSCRL RWLNYLHPGL  60
KRGKFTPHEQ RLESCSFYDT GGRDFVAAPT TAVEDSAKVY SMDEIWKDIE LSEESTSFPA  120
WDFCQSDSLW SMHEIDSKMT DHFNSFPFYN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552227.12e-56transcription factor MYB48 isoform X3
TrEMBLA0A4D9AAX11e-61A0A4D9AAX1_SALSN; Myb proto-oncogene protein, plant
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154