PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100223980121

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

WRKY

Protein Properties

Length: 347aa MW: 37802.2 Da PI: 9.0685

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100223980121	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	52.2	1.2e-16	286	325	21	59
-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 21 prsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 r+YY+C++ gCp++k+ver+++dp+++ +tYegeH+h+ Ote100223980121\|100223980121 286 FRGYYKCSTVrGCPARKHVERANDDPSMLMVTYEGEHRHT 325 59***9888**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	6.6E-17	184	230	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	2.5E-26	221	252	IPR003657	WRKY domain
PROSITE profile	PS50811	19.6	227	327	IPR003657	WRKY domain
SuperFamily	SSF118290	9.15E-5	230	249	IPR003657	WRKY domain
SMART	SM00774	1.2E-23	232	326	IPR003657	WRKY domain
SuperFamily	SSF118290	3.01E-13	284	325	IPR003657	WRKY domain
Pfam	PF03106	1.2E-13	286	324	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	2.5E-26	287	325	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MAVELLGYTN LNEQMAIQEA ASAGLKSMEH LIRAEGNFDS ESHWPRQVPP RSGSTSVVAV 60 DSCTERGLDS VEESGSTAEP ILSFSGSCRA SSSGYSXXXX XXXXXXXXXX XXXXXXXXXX 120 XXXXXXXXXX XXXXXXXXGN SSSTFVSSIT GEGSVSNGKG GSPSMFLAPA APAVSAGKPP 180 LSGKRCREHD HSANISGGKT SGSSRCHCKK RKSRVKRVIR VPAISSKVAD IPPDEYSWRK 240 YGQKPIKXXX XXXXXXXXXX XXIAKHCSIQ MDLQSNFANQ YSGSIFRGYY KCSTVRGCPA 300 RKHVERANDD PSMLMVTYEG EHRHTQGAMR EISAAGAPTQ LVVFESS

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MAVELLGYTN LNEQMAIQEA ASAGLKSMEH LIRAEGNFDS ESHWPRQVPP RSGSTSVVAV  60
DSCTERGLDS VEESGSTAEP ILSFSGSCRA SSSGYSXXXX XXXXXXXXXX XXXXXXXXXX  120
XXXXXXXXXX XXXXXXXXGN SSSTFVSSIT GEGSVSNGKG GSPSMFLAPA APAVSAGKPP  180
LSGKRCREHD HSANISGGKT SGSSRCHCKK RKSRVKRVIR VPAISSKVAD IPPDEYSWRK  240
YGQKPIKXXX XXXXXXXXXX XXIAKHCSIQ MDLQSNFANQ YSGSIFRGYY KCSTVRGCPA  300
RKHVERANDD PSMLMVTYEG EHRHTQGAMR EISAAGAPTQ LVVFESS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269\|PubMed:26433201}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269\|PubMed:11722756, ECO:0000269\|PubMed:26433201}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011082056.1	2e-98	probable WRKY transcription factor 17
Swissprot	Q9SV15	3e-61	WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBL	A0A0D5YAE2	8e-94	A0A0D5YAE2_SALMI; WRKY protein
STRING	Migut.A00430.1.p	2e-92	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3145	22	50

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ali MA,Wieczorek K,Kreil DP,Bohlmann H The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots. PLoS ONE, 2014. 9(7): p. e102360 [PMID:25033038] Jiang CH, et al. Transcription factors WRKY70 and WRKY11 served as regulators in rhizobacterium Bacillus cereus AR156-induced systemic resistance to Pseudomonas syringae pv. tomato DC3000 in Arabidopsis. J. Exp. Bot., 2016. 67(1): p. 157-74 [PMID:26433201] Ali MA, et al. Transcription factors WRKY11 and WRKY17 are involved in abiotic stress responses in Arabidopsis. J. Plant Physiol., 2018. 226: p. 12-21 [PMID:29689430]