PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100223980122

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

WRKY

Protein Properties

Length: 377aa MW: 42542.1 Da PI: 10.9567

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100223980122	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	52.1	1.3e-16	316	355	21	59
-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 21 prsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 r+YY+C++ gCp++k+ver+++dp+++ +tYegeH+h+ Ote100223980122\|100223980122 316 FRGYYKCSTVrGCPARKHVERANDDPSMLMVTYEGEHRHT 355 59***9888**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	4.8E-7	238	260	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	1.8E-26	251	282	IPR003657	WRKY domain
PROSITE profile	PS50811	19.6	257	357	IPR003657	WRKY domain
SMART	SM00774	1.2E-23	262	356	IPR003657	WRKY domain
SuperFamily	SSF118290	3.4E-13	314	355	IPR003657	WRKY domain
Pfam	PF03106	1.4E-13	316	354	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.8E-26	317	355	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MAVELLGYTN LNEQMAIQEA ASAGLKSMEH LIRAVSXXXX XXXXXXXXLD CRDITDFTVS 60 KFRKVISILN RTGHARFRRG PVQPQSSPLT PVQSEDLTQS RNPVQPLSLF SLSPAPVAPQ 120 APATAXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXLVTH PQRSCLRLPV 180 KAAFRTEKVD RRRCFWRRLL RRSPLVSRRS PEKGVVSMTI QLTSPGAKHL VLADATAKRG 240 VKSRVKRVIR VPAISSKVAD IPPDEYSWRK YGQKPIKXXX XXXXXXXXXX XXIAKHCSIQ 300 MDLQSNFANQ YSGSIFRGYY KCSTVRGCPA RKHVERANDD PSMLMVTYEG EHRHTQGAMR 360 EISAAGAPTQ LVVFESS

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MAVELLGYTN LNEQMAIQEA ASAGLKSMEH LIRAVSXXXX XXXXXXXXLD CRDITDFTVS  60
KFRKVISILN RTGHARFRRG PVQPQSSPLT PVQSEDLTQS RNPVQPLSLF SLSPAPVAPQ  120
APATAXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXLVTH PQRSCLRLPV  180
KAAFRTEKVD RRRCFWRRLL RRSPLVSRRS PEKGVVSMTI QLTSPGAKHL VLADATAKRG  240
VKSRVKRVIR VPAISSKVAD IPPDEYSWRK YGQKPIKXXX XXXXXXXXXX XXIAKHCSIQ  300
MDLQSNFANQ YSGSIFRGYY KCSTVRGCPA RKHVERANDD PSMLMVTYEG EHRHTQGAMR  360
EISAAGAPTQ LVVFESS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269\|PubMed:26433201}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269\|PubMed:11722756, ECO:0000269\|PubMed:26433201}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011082056.1	5e-46	probable WRKY transcription factor 17
Swissprot	Q9SV15	5e-38	WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBL	A0A0D5YAE2	1e-46	A0A0D5YAE2_SALMI; WRKY protein
STRING	Migut.A00430.1.p	5e-43	(Erythranthe guttata)

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ali MA,Wieczorek K,Kreil DP,Bohlmann H The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots. PLoS ONE, 2014. 9(7): p. e102360 [PMID:25033038] Jiang CH, et al. Transcription factors WRKY70 and WRKY11 served as regulators in rhizobacterium Bacillus cereus AR156-induced systemic resistance to Pseudomonas syringae pv. tomato DC3000 in Arabidopsis. J. Exp. Bot., 2016. 67(1): p. 157-74 [PMID:26433201] Ali MA, et al. Transcription factors WRKY11 and WRKY17 are involved in abiotic stress responses in Arabidopsis. J. Plant Physiol., 2018. 226: p. 12-21 [PMID:29689430]