PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100224380001

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

HD-ZIP

Protein Properties

Length: 226aa MW: 26550.2 Da PI: 7.7095

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100224380001	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	47.7	2.6e-15	51	111	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC........TS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl........gLterqVkvWFqNrRakek 56 ++++++eql Le+ F +++++ e++e+LA+++ rqV vWFqNrRa++k Ote100224380001\|100224380001 51 KRKLSEEQLSMLERSFGSEHKLESERKERLAAEVxxxxxxxxXXXPRQVAVWFQNRRARWK 111 45899*******************************************************9 PP
2	HD-ZIP_I/II	94.8	9.2e-31	50	149	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLg........lqprqvavWFqnrRARtktkqlEkdyeaLkraydalk 74 +kr+ls+eq+++LE+sF +e+kLe+erK++la e+ prqvavWFqnrRAR+k+k++E++y++L++++d+ + Ote100224380001\|100224380001 50 RKRKLSEEQLSMLERSFGSEHKLESERKERLAAEVXxxxxxxxxXXPRQVAVWFQNRRARWKAKKMEEEYSKLRSQLDSTV 130 8*****************************99862222222257******************************* PP HD-ZIP_I/II 75 eenerLekeveeLreelke 93 e++rLe+ev +++e+l e Ote100224380001\|100224380001 131 VEKCRLETEVVRMKEQLIE 149 ************99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.661	45	113	IPR001356	Homeobox domain
SMART	SM00389	1.0E-12	48	117	IPR001356	Homeobox domain
CDD	cd00086	1.92E-10	50	114	No hit	No description
SuperFamily	SSF46689	1.75E-12	50	123	IPR009057	Homeodomain-like
Pfam	PF00046	1.1E-12	51	111	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.2E-14	55	113	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MNPQFDDLVS HYYPNEIITH FLPEQGAAEK VKVRRRRRKT KGGEGGDLMR KRKLSEEQLS 60 MLERSFGSEH KLESERKERL AAEVXXXXXX XXXXXPRQVA VWFQNRRARW KAKKMEEEYS 120 KLRSQLDSTV VEKCRLETEV VRMKEQLIEA EKEIQRLSEG LRSNSPASSS LSMEANVDPQ 180 FLGDDVFYAH GFEWDDHIYY MXXXXXXXXX ASLLYILANN LIYSPL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016558663.1	1e-62	PREDICTED: homeobox-leucine zipper protein ATHB-40-like
Swissprot	Q9ZU70	3e-58	ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBL	A0A4D9C5W3	7e-66	A0A4D9C5W3_SALSN; Homeobox-leucine zipper protein
STRING	Solyc02g085630.2.1	1e-57	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1289	24	80

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241]