PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100224380011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HD-ZIP
Protein Properties Length: 210aa    MW: 24555.2 Da    PI: 9.8494
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100224380011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.92.2e-1574134456
                                   -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC........TS-HHHHHHHHHHHHHHHH CS
                      Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkkl........gLterqVkvWFqNrRakek 56 
                                   ++++++eql  Le+ F +++++  e++e+LA+++            rqV vWFqNrRa++k
  Ote100224380011|100224380011  74 KRKLSEEQLSMLERSFGSEHKLESERKERLAAEVxxxxxxxxXXXPRQVAVWFQNRRARWK 134
                                   45899*******************************************************9 PP
2HD-ZIP_I/II91.78.4e-3073164285
                   HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLg........lqprqvavWFqnrRARtktkqlEkdyeaLkraydalk 74 
                                   +kr+ls+eq+++LE+sF +e+kLe+erK++la e+           prqvavWFqnrRAR+k+k++E++y++L++++d+ +
  Ote100224380011|100224380011  73 RKRKLSEEQLSMLERSFGSEHKLESERKERLAAEVXxxxxxxxxXXPRQVAVWFQNRRARWKAKKMEEEYSKLRSQLDSTV 153
                                   8*******************************99862222222257*********************************** PP

                   HD-ZIP_I/II  75 eenerLekeve 85 
                                    e++rLe+eve
  Ote100224380011|100224380011 154 VEKCRLETEVE 164
                                   *******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.66168136IPR001356Homeobox domain
SMARTSM003891.0E-1271140IPR001356Homeobox domain
SuperFamilySSF466891.5E-1273146IPR009057Homeodomain-like
CDDcd000861.73E-973137No hitNo description
PfamPF000469.9E-1374134IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.4E-1575143IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MNPQFDDLVS HYYPNEIITH FLPEQGNNYT EITNEKRMHA ILNLNVRAGA AEKVKVRRRR  60
RKTKGGEGGD LMRKRKLSEE QLSMLERSFG SEHKLESERK ERLAAEVXXX XXXXXXXXPR  120
QVAVWFQNRR ARWKAKKMEE EYSKLRSQLD STVVEKCRLE TEVEFAPVVR MKEQLIEAEK  180
EIQRLSEGLR SNSPASSSLS MEANVDPQFL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099589.23e-52homeobox-leucine zipper protein ATHB-40
TrEMBLA0A2G9H3L84e-53A0A2G9H3L8_9LAMI; Uncharacterized protein
STRINGSolyc02g085630.2.11e-49(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12892480