PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100224720081
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family bHLH
Protein Properties Length: 226aa    MW: 26024.8 Da    PI: 11.8401
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100224720081genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.63.3e-164894455
                                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                                   hn  ErrRRdriN+++  L+ l+P+a      K +Ka++L +A+eY+ksLq
  Ote100224720081|100224720081 48 VHNLSERRRRDRINEKMRALQNLIPNA-----NKSDKASMLDEAIEYMKSLQ 94
                                  5*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.5174493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.81E-164798No hitNo description
SuperFamilySSF474593.53E-2047119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-2048102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-134894IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-165099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0009693Biological Processethylene biosynthetic process
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MILIGTRGRA GTRKNQSARA MQLNWSRVRR HRRVXXXXXX XXXRVAEVHN LSERRRRDRI  60
NEKMRALQNL IPNANKSDKA SMLDEAIEYM KSLQLQIQLM WMGRGMAPMM LPGMQHYMSR  120
VGMGIGPPIP MPAIQNLMRL LRLPIVDQPM NLSQAPNQAQ IGHNPMLNPV HYQNHMQNSG  180
FQEQYANYMN FHSMQNASPQ AANMFNFGFH PNQQNPVSAP QSNSDK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00082ChIP-seqTransfer from AT3G59060Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012830904.14e-80PREDICTED: transcription factor PIF4
TrEMBLA0A2G9HIV61e-85A0A2G9HIV6_9LAMI; Uncharacterized protein
TrEMBLA0A2G9HIW76e-87A0A2G9HIW7_9LAMI; Uncharacterized protein
STRINGMigut.M00105.1.p2e-79(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA104652226