PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100225510051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ZF-HD
Protein Properties Length: 173aa    MW: 20118.7 Da    PI: 9.5291
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100225510051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer93.51.8e-293385357
                   ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                                   vrY+eClkNhAa++G+++vDGC+Efmp  gee +a  ++CaAC+CHRnFHR+e 
  Ote100225510051|100225510051 33 DVRYRECLKNHAANMGSYVVDGCREFMPR-GEE-EALRMRCAACDCHRNFHRKEA 85
                                  69**************************9.444.68899**************96 PP
2Homeobox162e-05105165157
                                   TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                      Homeobox   1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                                   +r Rt+f++eq ++++el e    ++ + ++e+ ++L +++g++ ++ kvW +N ++ +kk
  Ote100225510051|100225510051 105 KRFRTKFSQEQKDRMQELAEklgwRTEKEDEEQVQRLCNETGVKRQVFKVWMHNNKQAMKK 165
                                   789**************99977777********************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047708.4E-273485IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-163484IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.8E-243584IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.1853684IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.08E-1894165IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-29101166IPR009057Homeodomain-like
PROSITE profilePS500719.799102166IPR001356Homeobox domain
TIGRFAMsTIGR015658.9E-25104161IPR006455Homeodomain, ZF-HD class
CDDcd000860.00555105167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
HQPQGPAFYA NAEVSDHHLP STATPPETSN RGDVRYRECL KNHAANMGSY VVDGCREFMP  60
RGEEEALRMR CAACDCHRNF HRKEAVLLNN PNSGYQGTGF VSPKKRFRTK FSQEQKDRMQ  120
ELAEKLGWRT EKEDEEQVQR LCNETGVKRQ VFKVWMHNNK QAMKKKKNIT QIH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A5e-211041621775ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00268DAPTransfer from AT2G18350Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022844342.14e-52zinc-finger homeodomain protein 2-like
RefseqXP_022844343.14e-52zinc-finger homeodomain protein 2-like
SwissprotQ9ZPW75e-49ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBLA0A2G9I8I69e-54A0A2G9I8I6_9LAMI; Uncharacterized protein
STRINGscaffold_304185.16e-49(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51824128