PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100226020001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ERF
Protein Properties Length: 143aa    MW: 16208 Da    PI: 5.0357
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100226020001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.81.7e-10721052255
                           AP2  22 pse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   ++  +g  +r +lg++ t+eeAa a+++a+ kl+g
  Ote100226020001|100226020001  72 WRRyRG-GARLWLGTYETPEEAAMAYDRAAFKLHG 105
                                   222222.4**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.3E-1362119IPR001471AP2/ERF domain
PROSITE profilePS5103214.09164113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-1770114IPR001471AP2/ERF domain
PfamPF008471.2E-770105IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-1470114IPR016177DNA-binding domain
CDDcd000183.27E-1871115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MEAESGSEFD LTWLESIRNY LLNDVVFPND FGCNASVVKE EDDVVSSQMI EEFLCDDSDS  60
PRRRVRAPAT EWRRYRGGAR LWLGTYETPE EAAMAYDRAA FKLHGSRARV NFPHLIGSGM  120
SEPNRITKRR RISVDPSCSP ASS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-13761192669ATERF1
3gcc_A3e-13761192669ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094418.13e-43ethylene-responsive transcription factor 13-like
TrEMBLA0A2G9HT341e-45A0A2G9HT34_9LAMI; Uncharacterized protein
STRINGSolyc01g090310.2.12e-29(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165