PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100226460061

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

Trihelix

Protein Properties

Length: 424aa MW: 48212.2 Da PI: 5.0829

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100226460061	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	79.4	5.3e-25	56	136	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 W ++e++ Li +r+e++ ++++k++k+lWe +s kmre+gf rsp++C++kw+nl k+ykk+k+++++++ +++++ Ote100226460061\|100226460061 56 WAQEETRSLICLRKEIDFLFNTSKSNKHLWENISMKMREKGFDRSPTMCTDKWRNLLKEYKKTKQNNQDGN----AKMSFY 132 ********************************************************************983....357799 PP trihelix 83 dqle 86 +++e Ote100226460061\|100226460061 133 KDIE 136 9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-4	47	117	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.386	48	112	IPR017877	Myb-like domain
SMART	SM00717	5.9E-5	52	114	IPR001005	SANT/Myb domain
CDD	cd12203	1.88E-26	54	119	No hit	No description
Pfam	PF13837	1.2E-19	55	138	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MLMPEKAQEQ EETAIEFYST KEASPNGNNM IIQIGDGDDQ NPPPPSPAPK KRAETWAQEE 60 TRSLICLRKE IDFLFNTSKS NKHLWENISM KMREKGFDRS PTMCTDKWRN LLKEYKKTKQ 120 NNQDGNAKMS FYKDIEEIMS ERGKNGHCWK NSVASSDKVD SFMQFSDKVV EIGVGFLYSS 180 VGXXXXXXXX ASKSFIAGKR LVEKCSVLHD CLILFGSLLL FFCEVAQSGI DDASLTFGPV 240 EDNGRSTLNL ERPLDHEAHP LAITAADASG VSPWNWRETP GNGENRSNYD GRVITVKLGD 300 YTKRIGIDGT ADAIKEALES AFRLRTKRAF WLEDEDNVVR SLDRDMPLGN YTLHVDEGLT 360 IKICLFDGSE HLPVHTEEKT FYTEDDFRGF LSRRCWTYLR EFDGYRNVDS MDELCPGALY 420 RGVN

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MLMPEKAQEQ EETAIEFYST KEASPNGNNM IIQIGDGDDQ NPPPPSPAPK KRAETWAQEE  60
TRSLICLRKE IDFLFNTSKS NKHLWENISM KMREKGFDRS PTMCTDKWRN LLKEYKKTKQ  120
NNQDGNAKMS FYKDIEEIMS ERGKNGHCWK NSVASSDKVD SFMQFSDKVV EIGVGFLYSS  180
VGXXXXXXXX ASKSFIAGKR LVEKCSVLHD CLILFGSLLL FFCEVAQSGI DDASLTFGPV  240
EDNGRSTLNL ERPLDHEAHP LAITAADASG VSPWNWRETP GNGENRSNYD GRVITVKLGD  300
YTKRIGIDGT ADAIKEALES AFRLRTKRAF WLEDEDNVVR SLDRDMPLGN YTLHVDEGLT  360
IKICLFDGSE HLPVHTEEKT FYTEDDFRGF LSRRCWTYLR EFDGYRNVDS MDELCPGALY  420
RGVN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	7e-38	50	134	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00004	PBM	Transfer from 920224	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071308.1	0.0	trihelix transcription factor GT-4-like
Swissprot	Q9FX53	1e-137	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A4D9B8M9	0.0	A0A4D9B8M9_SALSN; Uncharacterized protein
STRING	Migut.E00236.1.p	1e-170	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5113	21	36

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]