PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100226630061
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MIKC_MADS
Protein Properties Length: 231aa    MW: 26312.9 Da    PI: 6.9945
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100226630061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF1009.5e-32959151
                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                  krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  Ote100226630061|100226630061  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                                  79***********************************************96 PP
2K-box71.42.8e-248516326100
                         K-box  26 keienLq....reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                                   k ie L      ++R+llG+dL++L++++L+++e+qLe+slk+iRs++++++l+q+++lq kek + ++nkaL++klee
  Ote100226630061|100226630061  85 KDIEVLCqhcsMSLRQLLGDDLGPLNINDLEHIEHQLETSLKQIRSTRTQVMLDQLSDLQSKEKLMLDANKALERKLEE 163
                                   55555544454789**************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.515161IPR002100Transcription factor, MADS-box
CDDcd002655.83E-47278No hitNo description
SuperFamilySSF554559.94E-35284IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-333859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.44877167IPR002487Transcription factor, K-box
PfamPF014863.5E-2092161IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0048481Biological Processplant ovule development
GO:0071486Biological Processcellular response to high light intensity
GO:0071492Biological Processcellular response to UV-A
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS  60
SNMVKTLERY QKCSYGSLEV NHPSKDIEVL CQHCSMSLRQ LLGDDLGPLN INDLEHIEHQ  120
LETSLKQIRS TRTQVMLDQL SDLQSKEKLM LDANKALERK LEEIYAANHL QQSWEHSSTY  180
DHHHAQSQGF FQPLDCNSTL QIGYSDPASS SQMTAGTDVQ NVNGLIPGWM L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A3e-20751611101Developmental protein SEPALLATA 3
4ox0_B3e-20751611101Developmental protein SEPALLATA 3
4ox0_C3e-20751611101Developmental protein SEPALLATA 3
4ox0_D3e-20751611101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099041.11e-148developmental protein SEPALLATA 1 isoform X2
SwissprotQ8LLR21e-121MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A4D8YLI11e-145A0A4D8YLI1_SALSN; MADS-box transcription factor, plant
STRINGXP_009757151.11e-122(Nicotiana sylvestris)
STRINGXP_009608615.11e-122(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]