PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100227130021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 90aa MW: 9974.33 Da PI: 8.4906

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100227130021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.6	2.9e-10	15	56	15	55
HHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + N+ +++L+ lP+ + ++++ K s + iL+++++YIk+Lq Ote100227130021\|100227130021 15 EANDLIFKLQAFLPQeSNSTRNNKTSASKILKETCNYIKKLQ 56 66***********666*********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.937	1	55	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.8E-9	14	67	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-8	14	70	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-7	15	56	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 90 aa Download sequence Send to blast
MSSRRATISK FTQDEANDLI FKLQAFLPQE SNSTRNNKTS ASKILKETCN YIKKLQKEVD 60 DLSDGLSQRL ASGDIPLADA DIIATLLKLS

Functional Description ? help Back to Top
Source	Description
UniProt	Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269\|PubMed:16527868}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011087225.1	9e-32	transcription factor ILI5-like
Swissprot	Q9LJX1	2e-20	PRE5_ARATH; Transcription factor PRE5
TrEMBL	A0A0H3YC63	1e-38	A0A0H3YC63_SALMI; Basic helix-loop-helix transcription factor
STRING	Migut.D01841.1.p	6e-24	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA353	24	161