PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100227420081

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 257aa MW: 28895.3 Da PI: 7.663

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100227420081	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.8	4.1e-08	146	193	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR +iN+++ L++++P + k + a +L + ++Y++sLq Ote100227420081\|100227420081 146 SHSLAERVRRGKINERLRCLQDIVPGC----YKTMGMAVMLDEIINYVQSLQ 193 8***********************9....35599999********998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.88E-16	140	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.41E-9	140	196	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.1E-15	142	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.097	142	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.7E-5	146	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.2E-8	148	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MADHQFFETF KHSFSLADID SDVEIINYLS GLYQNDRDWS SALSFHHNSM NVENMNGVFV 60 NAENGALTPT QPIISSKERK RKANDIDTTC ANTSPHSSPQ VSDNSGSRKT RRGGRGKKAT 120 RSNEKEGEKP REVIHVRAKR GQATDSHSLA ERVRRGKINE RLRCLQDIVP GCYKTMGMAV 180 MLDEIINYVQ SLQNQVDFLS MKLTAASSFY DFNTETDAIE AMQRANAFEA MKIEDVAFPS 240 AQLAQNLGYY PPQLPHK

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of brassinosteroid signaling. {ECO:0000269\|PubMed:12454087}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269\|PubMed:12454087}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011080441.1	8e-93	transcription factor BEE 1-like
Swissprot	Q8GWK7	2e-59	BEE3_ARATH; Transcription factor BEE 3
TrEMBL	A0A2G9GHD7	6e-86	A0A2G9GHD7_9LAMI; Uncharacterized protein
STRING	Migut.D00641.1.p	4e-84	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3971	23	44

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]