PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100227500191
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family bHLH
Protein Properties Length: 201aa    MW: 22156.9 Da    PI: 4.4228
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100227500191genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.48e-0644831255
                                  HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                                  RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Ote100227500191|100227500191 44 RREKISKKMKCLQDLVPGC----NKVTGKAGMLDEIINYVQSLQ 83
                                  9*****************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.5733282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-53988IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.23E-64487No hitNo description
SuperFamilySSF474593.01E-1245100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-144599IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MQLDVEEETE EGAAEEKSDI TTKTERENSG NTSSKGSLKA SEARREKISK KMKCLQDLVP  60
GCNKVTGKAG MLDEIINYVQ SLQKQVEFLS MKLATVNPRL DFSIDNLFAK EIPAYVASLP  120
SAQMEATNPA CFQYNPMQLG IEVAIDQSQS QSQSHQTVSP KPGSSSLPIP EVFIDPSCIS  180
QLQQLSGWES DWQNLFSTGF Q
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by flagellin, jasmonic acid (JA), brassinosteroid and cytokinin, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087, ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099632.13e-93transcription factor BEE 2
SwissprotQ93VJ44e-38BEE2_ARATH; Transcription factor BEE 2
TrEMBLA0A022QLX65e-76A0A022QLX6_ERYGU; Uncharacterized protein
STRINGMigut.O00889.1.p9e-77(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40002142
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Singh M,Gupta A,Singh D,Khurana JP,Laxmi A
    Arabidopsis RSS1 Mediates Cross-Talk Between Glucose and Light Signaling During Hypocotyl Elongation Growth.
    Sci Rep, 2017. 7(1): p. 16101
    [PMID:29170398]