PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100227520111
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family AP2
Protein Properties Length: 412aa    MW: 45397.6 Da    PI: 6.6406
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100227520111genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.25.5e-10163219155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   s y+GV++++++gr++A+++d  +       rk  + g ++ +++Aa+ ++ a++k++g
  Ote100227520111|100227520111 163 SIYRGVTRHRWTGRYEAHLWDnTCR-RegqARKGRQ-GGYDKEDKAARSYDLAALKYWG 219
                                   57*******************4444.2344336655.7799999*************98 PP
2AP250.26.3e-16262313155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Ote100227520111|100227520111 262 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 313
                                   57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.54E-14163229IPR016177DNA-binding domain
CDDcd000181.78E-17163229No hitNo description
PfamPF008479.6E-8163219IPR001471AP2/ERF domain
PROSITE profilePS5103217.003164227IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-11164228IPR001471AP2/ERF domain
SMARTSM003801.4E-20164233IPR001471AP2/ERF domain
PRINTSPR003671.5E-6165176IPR001471AP2/ERF domain
CDDcd000182.12E-11262323No hitNo description
PfamPF008473.3E-10262313IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-18262323IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-18263322IPR001471AP2/ERF domain
PROSITE profilePS5103219.151263321IPR001471AP2/ERF domain
SMARTSM003807.7E-32263327IPR001471AP2/ERF domain
PRINTSPR003671.5E-6303323IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MYTEAESHQL KEHGGHAAVP TTAYMQXXXX XXXXXDFFTD GDSTETQNSS LTHIYEHHQA  60
GGAAAYFSSH EHQDHLNAVA GFQAFSANSG SDVDDSALAA QTQSPAESGS ELVAYNCPIS  120
AATNTTTNAL SLGVVNDNNN SVIARVDSES CKKIADTFGQ RTSIYRGVTR HRWTGRYEAH  180
LWDNTCRREG QARKGRQGGY DKEDKAARSY DLAALKYWGP TATTNFPISN YTKELEEMKH  240
VTKQEFIASL RRQSSGFSRG ASIYRGVTRH HQQGRWQARI GRVAGNKDLY LGTFATEEEA  300
AEAYDIAAIK FRGVNAVTNF EMSRYDVEAI SESPLPIGGA AKRMKLSLEG EEKLPLQTSC  360
TSNNSSSNNV SCFGIQPPFY HHNLFHHIDS GASGSVSAMV APEFFIWPHQ SF
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097469.10.0AP2-like ethylene-responsive transcription factor AIL6 isoform X1
SwissprotQ52QU21e-134AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A2G9GKN60.0A0A2G9GKN6_9LAMI; Uncharacterized protein
STRINGXP_006426254.11e-168(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25802449
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]