PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100227540001

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NAC

Protein Properties

Length: 181aa MW: 21098.8 Da PI: 10.1808

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100227540001	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.5	6.1e-54	13	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknrat 78 +ppGfrFhPtdeel+++yLkkkv+ +k+++ +vi+evd++k+ePwdL++++k ++ewyfFs++d+ky+tg+r+nrat Ote100227540001\|100227540001 13 VPPGFRFHPTDEELLHFYLKKKVTFQKFDM-DVIREVDLNKIEPWDLQERCKIgstPQNEWYFFSHKDRKYPTGSRTNRAT 92 69**************************.99**********964444222455****************** PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ++g+Wkatg+dk + + + +++g++ktLvfy+grap+g+ktdW+mheyrle Ote100227540001\|100227540001 93 SAGFWKATGRDKCIRN-TFKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 142 ***********9.8899**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.37E-58	11	179	IPR003441	NAC domain
PROSITE profile	PS51005	56.74	13	179	IPR003441	NAC domain
Pfam	PF02365	2.1E-28	14	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009834	Biological Process	plant-type secondary cell wall biogenesis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048829	Biological Process	root cap development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MAAGSSSGGG GGVPPGFRFH PTDEELLHFY LKKKVTFQKF DMDVIREVDL NKIEPWDLQE 60 RCKIGSTPQN EWYFFSHKDR KYPTGSRTNR ATSAGFWKAT GRDKCIRNTF KKIGMRKTLV 120 FYRGRAPHGQ KTDWIMHEYR LEXXXXXXXX XXXXXXXXXS DNDPPPNEDG WVVCRVFKKK 180 N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-50	13	181	15	170	Stress-induced transcription factor NAC1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:20197506}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00431	DAP	Transfer from AT4G10350	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003605666.1	1e-102	protein BEARSKIN1
Swissprot	Q9SV87	1e-99	BRN2_ARATH; Protein BEARSKIN2
TrEMBL	A0A2G9G8M7	1e-102	A0A2G9G8M7_9LAMI; Uncharacterized protein
STRING	AES87863	1e-101	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]