PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100227540031

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NAC

Protein Properties

Length: 137aa MW: 15860.1 Da PI: 10.5411

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100227540031	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	163.9	5.6e-51	13	137	1	124
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknrat 78 +ppGfrFhPtdeel+++yLkkkv+ +k+++ +vi+evd++k+ePwdL++++k ++ewyfFs++d+ky+tg+r+nrat Ote100227540031\|100227540031 13 VPPGFRFHPTDEELLHFYLKKKVTFQKFDM-DVIREVDLNKIEPWDLQERCKIgstPQNEWYFFSHKDRKYPTGSRTNRAT 92 69**************************.99**********964444222455****************** PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmh 124 ++g+Wkatg+dk + + + +++g++ktLvfy+grap+g+ktdW+mh Ote100227540031\|100227540031 93 SAGFWKATGRDKCIRN-TFKKIGMRKTLVFYRGRAPHGQKTDWIMH 137 ***********9.8899**********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.97E-51	11	137	IPR003441	NAC domain
PROSITE profile	PS51005	50.096	13	137	IPR003441	NAC domain
Pfam	PF02365	1.9E-25	14	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
MAAGSSSGGG GGVPPGFRFH PTDEELLHFY LKKKVTFQKF DMDVIREVDL NKIEPWDLQE 60 RCKIGSTPQN EWYFFSHKDR KYPTGSRTNR ATSAGFWKAT GRDKCIRNTF KKIGMRKTLV 120 FYRGRAPHGQ KTDWIMH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-46	13	137	15	136	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:20197506}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009757635.1	8e-91	PREDICTED: protein BEARSKIN1
Refseq	XP_023523840.1	2e-90	protein BEARSKIN2-like
Swissprot	Q9SV87	1e-88	BRN2_ARATH; Protein BEARSKIN2
TrEMBL	A0A103XWK6	5e-89	A0A103XWK6_CYNCS; No apical meristem (NAM) protein
TrEMBL	A0A1S3X3A6	2e-88	A0A1S3X3A6_TOBAC; protein BEARSKIN2-like
TrEMBL	A0A1U7V7B1	2e-89	A0A1U7V7B1_NICSY; protein BEARSKIN1
TrEMBL	A0A251T1N5	2e-88	A0A251T1N5_HELAN; Putative NAC domain containing protein 70
STRING	XP_004506361.1	4e-89	(Cicer arietinum)
STRING	XP_009757635.1	3e-90	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]