PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100227730021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GATA
Protein Properties Length: 266aa    MW: 30125 Da    PI: 9.5446
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100227730021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.58e-18186220135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   C +C++ kTp+WR gp g+ktLCnaCG++y++ +l
  Ote100227730021|100227730021 186 CLHCQAEKTPQWRAGPMGPKTLCNACGVRYKSGRL 220
                                   99*****************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.859180216IPR000679Zinc finger, GATA-type
SMARTSM004011.7E-17180234IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-15182243No hitNo description
Gene3DG3DSA:3.30.50.101.5E-14183218IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.45E-13185233No hitNo description
PfamPF003201.9E-15186220IPR000679Zinc finger, GATA-type
PROSITE patternPS003440186211IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MELLDSAGAC FTVDDDLLNF NLDGEVAIFA AKTLTLKKLE LRIDHEFIAL WVCISGIRGR  60
GGIRMVIQQG RIPHSRDLLR XXXXXXXXXX PELVMNHQSP VSVLEXXXXX XXXXXXXXXX  120
XXXXXXXXXX XXPMNYPVRA XXXXXXXXXX FGNFPSQQSL WLNQVNVKIK KEVSFTSGVV  180
GMGRRCLHCQ AEKTPQWRAG PMGPKTLCNA CGVRYKSGRL LPEYRPASSP TFSSELHSNS  240
HRKVVEMRRQ KEYVHGEGVA CGYRVG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011091388.11e-66GATA transcription factor 1
TrEMBLA0A2G9GS872e-65A0A2G9GS87_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40762445