PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100228150101
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family LSD
Protein Properties Length: 151aa    MW: 15773.5 Da    PI: 8.3128
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100228150101genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD141.52.1e-13731125
                       zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                                  C+gCrt+L YPrGA++V+Ca+C+ V
  Ote100228150101|100228150101  7 CSGCRTVLLYPRGATNVCCAICNVV 31
                                  ***********************98 PP
2zf-LSD139.31e-124670125
                       zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                                  CggCrtlL+  rGA sVRC++C+tV
  Ote100228150101|100228150101 46 CGGCRTLLMHARGAASVRCSCCHTV 70
                                  ************************9 PP
3zf-LSD125.12.9e-0874881125
                       zf-LSD1 11 PrGApsVRCalCdtV 25
                                  P+GApsV+CalC+++
  Ote100228150101|100228150101 74 PAGAPSVKCALCHFI 88
                                  9************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010538.2E-13434IPR005735Zinc finger, LSD1-type
PfamPF069431.8E-11731IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.1E-154373IPR005735Zinc finger, LSD1-type
PfamPF069432.3E-114670IPR005735Zinc finger, LSD1-type
PfamPF069438.3E-67388IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010538.5E-47489IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MQNQLVCSGC RTVLLYPRGA TNVCCAICNV VTAVHPPGME MAQLICGGCR TLLMHARGAA  60
SVRCSCCHTV NLVPAGAPSV KCALCHFITN ANVGDTRVPI PVHRPGAIPP PALTPSYPVP  120
HSHNQTVVVQ NPMTVDESGK LVNNVVVGVT T
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096731.13e-74protein LSD1
RefseqXP_022845870.14e-74protein LOL3-like isoform X1
RefseqXP_022845871.14e-74protein LOL3-like isoform X1
RefseqXP_022845872.14e-74protein LOL3-like isoform X1
SwissprotQ2QMB32e-51LOL2_ORYSJ; Protein LOL2
TrEMBLA0A4D9AS339e-75A0A4D9AS33_SALSN; Uncharacterized protein
STRINGXP_008225697.15e-71(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16792467
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wu J, et al.
    OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa.
    Plant J., 2014. 80(6): p. 1118-30
    [PMID:25353370]