PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100228290231
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MIKC_MADS
Protein Properties Length: 215aa    MW: 24543.4 Da    PI: 8.8689
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100228290231genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF793.3e-25958150
                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                  krien   rqv+f+kRr+g+lKKA+ELSvLCdae+ + ifs++gklye +
  Ote100228290231|100228290231  9 KRIENPVHRQVSFCKRRAGLLKKAKELSVLCDAEIGLFIFSPHGKLYELA 58
                                  79*********************************************965 PP
2K-box53.69.3e-19841778100
                         K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedL.esLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                                   +++ +++ +l++e++ +k eie+Lq+ +R + G +  + +sl eL+ Le++Le  + ++Rs K++++ ++i+ l++ke  l
  Ote100228290231|100228290231  84 DNQVNNHVELKEEINLMKHEIETLQKGLRYISGGGTpGAMSLDELNVLEKHLEIWIYQVRSAKMDIMAQEIQLLKNKEGIL 164
                                   47788999***********************98875489****************************************** PP

                         K-box  88 qeenkaLrkklee 100
                                   q +nk L++k+ee
  Ote100228290231|100228290231 165 QAANKHLQEKIEE 177
                                   ***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-35160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-27174IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.548161IPR002100Transcription factor, MADS-box
CDDcd002651.18E-38275No hitNo description
PRINTSPR004043.3E-26323IPR002100Transcription factor, MADS-box
PfamPF003192.3E-221056IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-263859IPR002100Transcription factor, MADS-box
PfamPF014868.2E-2086175IPR002487Transcription factor, K-box
PROSITE profilePS5129712.52790181IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MARGKIQMKR IENPVHRQVS FCKRRAGLLK KAKELSVLCD AEIGLFIFSP HGKLYELATK  60
GCMQSLIEKY TKHNKEIRAG GAKDNQVNNH VELKEEINLM KHEIETLQKG LRYISGGGTP  120
GAMSLDELNV LEKHLEIWIY QVRSAKMDIM AQEIQLLKNK EGILQAANKH LQEKIEEQYG  180
MIGLPPMLAD IGCXXXXXXX XXXXXXIPNQ EIYQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-17174173MEF2C
5f28_B3e-17174173MEF2C
5f28_C3e-17174173MEF2C
5f28_D3e-17174173MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095942.11e-100agamous-like MADS-box protein AGL12 isoform X1
SwissprotA2YQK91e-72MAD26_ORYSI; MADS-box transcription factor 26
SwissprotQ0J8G81e-72MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBLA0A4D8YCF41e-109A0A4D8YCF4_SALSN; MADS-box transcription factor, plant
STRINGMigut.C01339.1.p6e-97(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA98102024
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Lee S, et al.
    Further characterization of a rice AGL12 group MADS-box gene, OsMADS26.
    Plant Physiol., 2008. 147(1): p. 156-68
    [PMID:18354041]
  3. Khong GN, et al.
    OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice.
    Plant Physiol., 2015. 169(4): p. 2935-49
    [PMID:26424158]