PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100228620011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 86aa    MW: 9800.97 Da    PI: 7.6873
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100228620011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding323e-101055244
                                  SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
               Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                                  g+WT++E +l+ +a +++  +   +W+ +ar +g g++++++k ++
  Ote100228620011|100228620011 10 GSWTAQENKLFEKALARFDREtpdRWHNVARAVGGGKSAEEVKKHY 55
                                  79*****************88************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.307763IPR017884SANT domain
SMARTSM007177.4E-9861IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-5959IPR009057Homeodomain-like
SuperFamilySSF466892.39E-121067IPR009057Homeodomain-like
PfamPF002495.3E-81055IPR001005SANT/Myb domain
CDDcd001672.54E-61155No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MASSSLRAGG SWTAQENKLF EKALARFDRE TPDRWHNVAR AVGGGKSAEE VKKHYDILME  60
DLRRIESGYV PIPNYKTTTA EDEIRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-29386287RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012836815.12e-42PREDICTED: protein RADIALIS-like 4
SwissprotQ1A1736e-32RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2G9H3U01e-43A0A2G9H3U0_9LAMI; Uncharacterized protein
STRINGMigut.B00229.1.p9e-42(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231