PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100229170011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

C2H2

Protein Properties

Length: 341aa MW: 37808.7 Da PI: 9.9215

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100229170011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00023	99	121	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Ote100229170011\|100229170011 99 WKCEKCSKKYAVQSDWKAHSKTC 121 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	7.5E-5	87	120	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	9.52E-5	94	143	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MMSGDVFAVP NSAAAKVFPH ESQTNPNSKP SSKKRRNLPG TPGHNLPWKL KQRANKDQIK 60 KKVYICPEKS CVHHEPGRAL GDLTGIKKHF SRKHGEKKWK CEKCSKKYAV QSDWKAHSKT 120 CGTREYKCDC GTLFSRKDSF ITHRAFCDAL AEESARIPCV GSNNLNFRDD LSGNPQPNCG 180 FPTSAGIPHL GVGFGAGNSH HQQKPRLSLW LDQANSQLNP IDHHNPDFLM NSSTSSSDIV 240 QMASNNLFGS NPNYANLSLS PLAPPQGMKE EQVSNQANTN TLADSLASLY SDNQNKSPAS 300 XXXXXXXXXX XXXXXXXXXX XXXLKWGRPK AVRHSSATQW E

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-38	95	164	3	72	Zinc finger protein JACKDAW
5b3h_F	1e-38	95	164	3	72	Zinc finger protein JACKDAW
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011094681.1	1e-141	protein indeterminate-domain 9
TrEMBL	A0A2G9GP51	1e-127	A0A2G9GP51_9LAMI; Uncharacterized protein
STRING	XP_009778699.1	1e-112	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350