PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100229370071
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family B3
Protein Properties Length: 546aa    MW: 60638.7 Da    PI: 8.1425
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100229370071genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.81.2e-19323422198
                                   EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkeg 77 
                                   f+k+l+ sd+++ grlvlpk +ae++   +++ e++ ++++d +g++W++++++  +++s++yvl+ G     +  +L++g
  Ote100229370071|100229370071 323 FEKTLSASDAGRIGRLVLPKACAEAYfpAINQSEGIPIRIQDIKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAG 402
                                   99**************************888889999***************9989999999***9.************** PP

                                   -EEEEEE-SSSEE..EEEEE- CS
                            B3  78 DfvvFkldgrsefelvvkvfr 98 
                                   D+v+F++++  + +lv++ ++
  Ote100229370071|100229370071 403 DTVIFSRIE-PGNQLVIGCRK 422
                                   ******776.55555666554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.3E-29320426IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-20320419IPR015300DNA-binding pseudobarrel domain
CDDcd100179.72E-24321422No hitNo description
SMARTSM010192.1E-20323423IPR003340B3 DNA binding domain
PROSITE profilePS5086310.729323424IPR003340B3 DNA binding domain
PfamPF023621.2E-16323422IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MGSKNCMNEV CRATTLSDWR KGWSLKSGGF AKLCYKCGSA YENSVFCETY HSDESGWREC  60
RICGKVIINI VHCGCIASRH LFEYMEFGGV ACISCAKHLE IHSLQPVQIP CDILSEKSAN  120
KNCSMDVQPI VTEHRVDDEK FSTRKLLQLT RAMGVHNVTS AVDHLKKEEN VLRSTDSTKR  180
VPNHTQNGSS IFVKPDYSRP KQGVKDMYES LAHPSLKFSL TSPLGSSNSV LPIPGGIVEV  240
NEQTKSSSLH GQKGRHISPK PPKPSAMLGL EANKGSASQT RVPRPPAEGR GRNQLLPRYW  300
PRITDQELQQ LSGDLKSTIV PLFEKTLSAS DAGRIGRLVL PKACAEAYFP AINQSEGIPI  360
RIQDIKGKEW TFQFRFWPNN NSRMYVLEGV TPCIQNMQLQ AGDTVIFSRI EPGNQLVIGC  420
RKANNADTQE PQTPSALNGD SPGEASFSGV TDAQTSNGGR ISDDSQPQHT TISEKKKARN  480
IKNKRLLMNN DDATELRVTW EEAQELFRPS LFSEPTIVIV EDHEFEEFEE PPVFGKRTVF  540
ISRASG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C4e-693014261126B3 domain-containing transcription repressor VAL1
5yzz_C4e-693014261126B3 domain-containing transcription repressor VAL1
5z00_C4e-693014261126B3 domain-containing transcription repressor VAL1
5z00_G4e-693014261126B3 domain-containing transcription repressor VAL1
5z00_K4e-693014261126B3 domain-containing transcription repressor VAL1
5z00_M4e-693014261126B3 domain-containing transcription repressor VAL1
6j9a_A4e-693014262127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080654.20.0LOW QUALITY PROTEIN: B3 domain-containing transcription repressor VAL1
TrEMBLA0A4D8YV420.0A0A4D8YV42_SALSN; Uncharacterized protein
STRINGMigut.D00818.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14912365