PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100229580171

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

AP2

Protein Properties

Length: 347aa MW: 38283.7 Da PI: 8.6781

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100229580171	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55.2	1.7e-17	109	158	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Ote100229580171\|100229580171 109 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTALAAARAYDRAAIKFRG 158 78*****************......55**********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	3.7E-9	109	158	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.5E-15	109	168	IPR016177	DNA-binding domain
CDD	cd00018	3.81E-12	110	168	No hit	No description
SMART	SM00380	3.7E-31	110	172	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	17.28	110	166	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.5E-17	110	167	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
PIPLSXXXXX XXXXXFDLNL TLDSSDGHKL DANNCDGWSR EASPANGGVE SSSSNDDACS 60 RRAAASALNF DRGEPAAFSS PRVAVQQEVQ QVQVVQARKS RRGPRSRSSQ YRGVTFYRRT 120 GRWESHIWDC GKQVYLGGFD TALAAARAYD RAAIKFRGVE ADINFNHSDY DDMKPMMNLS 180 KEEFVQALRK QSNVFSRGSC KYRAQNPGIK AYDKGAIMCN GETTLEPRYD KSQHDLNLNL 240 GMPASARSPK ESGWLDSLKL HLGSSASNGG VPVRSRHPSL NPQFVPNNEE RETSASQLEV 300 GNLGERVHGH YQTAANSTAA SSRFSSEETA RNTLASYPWI NPYLPPS

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

PIPLSXXXXX XXXXXFDLNL TLDSSDGHKL DANNCDGWSR EASPANGGVE SSSSNDDACS  60
RRAAASALNF DRGEPAAFSS PRVAVQQEVQ QVQVVQARKS RRGPRSRSSQ YRGVTFYRRT  120
GRWESHIWDC GKQVYLGGFD TALAAARAYD RAAIKFRGVE ADINFNHSDY DDMKPMMNLS  180
KEEFVQALRK QSNVFSRGSC KYRAQNPGIK AYDKGAIMCN GETTLEPRYD KSQHDLNLNL  240
GMPASARSPK ESGWLDSLKL HLGSSASNGG VPVRSRHPSL NPQFVPNNEE RETSASQLEV  300
GNLGERVHGH YQTAANSTAA SSRFSSEETA RNTLASYPWI NPYLPPS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor (By similarity). Involved in spikelet transition. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250\|UniProtKB:A0A0N7KMH0, ECO:0000250\|UniProtKB:P47927}.
UniProt	Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250\|UniProtKB:P47927, ECO:0000269\|PubMed:28066457, ECO:0000305\|PubMed:26631749}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305\|PubMed:26631749, ECO:0000305\|PubMed:28066457}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011089376.1	1e-64	ethylene-responsive transcription factor RAP2-7-like isoform X2
Swissprot	A0A0N7KMH0	9e-47	AP24_ORYSJ; APETALA2-like protein 4
Swissprot	B8B0I8	1e-46	AP24_ORYSI; APETALA2-like protein 4
TrEMBL	A0A4D9AJE7	6e-89	A0A4D9AJE7_SALSN; AP2-like factor, euAP2 lineage
STRING	Lus10019905	1e-55	(Linum usitatissimum)
STRING	Lus10026477	4e-57	(Linum usitatissimum)

Publications ? help Back to Top
Wang L, et al. Coordinated regulation of vegetative and reproductive branching in rice. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9 [PMID:26631749] Dai Z,Wang J,Zhu M,Miao X,Shi Z OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice. Front Plant Sci, 2016. 7: p. 1891 [PMID:28066457]